ENSDARG00000055374


Danio rerio

Features
Gene ID: ENSDARG00000055374
  
Biological name :irf4b
  
Synonyms : interferon regulatory factor 4b / irf4b
  
Possible biological names infered from orthology : interferon regulatory factor 4 / IRF4 / Q15306 / Q64287
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 26556174
Gene end: 26563832
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119326
Ensembl peptide - ENSDARP00000127674
Ensembl peptide - ENSDARP00000146240
swissprot - Q5PNN7
swissprot - X1WBT2
ZFIN ID - ZDB-GENE-041001-131
Ensembl - ENSDARG00000055374
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000043913Gallus gallus
 IRF4ENSGALG00000012830Gallus gallus
 IRF4ENSG00000137265Homo sapiens
 Irf4ENSMUSG00000021356Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
irf4a / interferon regulatory factor 4a / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000000656056
irf10 / interferon regulatory factor 10ENSDARG0000002765835
irf8 / interferon regulatory factor 8 / P23611* / Q02556*ENSDARG0000005640731
irf9 / interferon regulatory factor 9 / Q00978* / Q61179*ENSDARG0000001645728
irf6 / interferon regulatory factor 6 / O14896* / P97431*ENSDARG0000010198625
irf5 / interferon regulatory factor 5 / P56477* / Q13568*ENSDARG0000004568123
irf7 / interferon regulatory factor 7 / P70434* / Q92985*ENSDARG0000004566118
irf3 / interferon regulatory factor 3 / P70671* / Q14653*ENSDARG0000007625116
irf2a / interferon regulatory factor 2aENSDARG0000000738714
irf1a / interferon regulatory factor 1aENSDARG0000004349214
irf1b / interferon regulatory factor 1b / IRF1* / P10914* / interferon regulatory factor 1*ENSDARG0000004324914
irf2 / interferon regulatory factor 2 / P14316* / P23906*ENSDARG0000004046514


Protein motifs (from Interpro)
Interpro ID Name
 IPR001346  Interferon regulatory factor DNA-binding domain
 IPR008984  SMAD/FHA domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017855  SMAD-like domain superfamily
 IPR019471  Interferon regulatory factor-3
 IPR019817  Interferon regulatory factor, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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