ENSDARG00000016457


Danio rerio

Features
Gene ID: ENSDARG00000016457
  
Biological name :irf9
  
Synonyms : interferon regulatory factor 9 / irf9
  
Possible biological names infered from orthology : Q00978 / Q61179
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 13282797
Gene end: 13306883
  
Corresponding Affymetrix probe sets: Dr.12308.1.S1_at (Zebrafish Array)   NM_205710_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000123550
Ensembl peptide - ENSDARP00000126686
Ensembl peptide - ENSDARP00000127044
NCBI entrez gene - 403013     See in Manteia.
RefSeq - NM_205710
RefSeq - XM_005156059
RefSeq Peptide - NP_991273
swissprot - R4GDX9
swissprot - R4GEY0
swissprot - F1Q573
ZFIN ID - ZDB-GENE-040912-165
Ensembl - ENSDARG00000016457
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 IRF9ENSG00000213928Homo sapiens
 Irf9ENSMUSG00000002325Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
irf4a / interferon regulatory factor 4a / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000000656031
irf8 / interferon regulatory factor 8 / P23611* / Q02556*ENSDARG0000005640731
irf10 / interferon regulatory factor 10ENSDARG0000002765829
irf4b / interferon regulatory factor 4b / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000005537428
irf5 / interferon regulatory factor 5 / P56477* / Q13568*ENSDARG0000004568123
irf6 / interferon regulatory factor 6 / O14896* / P97431*ENSDARG0000010198622
irf7 / interferon regulatory factor 7 / P70434* / Q92985*ENSDARG0000004566120
irf3 / interferon regulatory factor 3 / P70671* / Q14653*ENSDARG0000007625118
irf1b / interferon regulatory factor 1b / IRF1* / P10914* / interferon regulatory factor 1*ENSDARG0000004324914
irf2a / interferon regulatory factor 2aENSDARG0000000738712
irf2 / interferon regulatory factor 2 / P14316* / P23906*ENSDARG0000004046512
irf1a / interferon regulatory factor 1aENSDARG0000004349211


Protein motifs (from Interpro)
Interpro ID Name
 IPR001346  Interferon regulatory factor DNA-binding domain
 IPR008984  SMAD/FHA domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017855  SMAD-like domain superfamily
 IPR019471  Interferon regulatory factor-3
 IPR019817  Interferon regulatory factor, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
Interferon alpha/beta signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000076182 stat1b / signal transducer and activator of transcription 1b / STAT1* / P42224* / signal transducer and activator of transcription 1*  / complex / reaction
 ENSDARG00000031647 stat2 / signal transducer and activator of transcription 2 / P52630*  / complex / reaction






 

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