ENSDARG00000043249


Danio rerio

Features
Gene ID: ENSDARG00000043249
  
Biological name :irf1b
  
Synonyms : interferon regulatory factor 1b / irf1b
  
Possible biological names infered from orthology : interferon regulatory factor 1 / IRF1 / P10914 / P15314
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 45626136
Gene end: 45633317
  
Corresponding Affymetrix probe sets: Dr.914.1.A1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000140878
Ensembl peptide - ENSDARP00000156859
swissprot - F1QDN4
ZFIN ID - ZDB-GENE-041114-13
Ensembl - ENSDARG00000043249
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 IRF1ENSGALG00000006785Gallus gallus
 IRF1ENSG00000125347Homo sapiens
 Irf1ENSMUSG00000018899Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
irf2a / interferon regulatory factor 2aENSDARG0000000738737
irf2 / interferon regulatory factor 2 / P14316* / P23906*ENSDARG0000004046534
irf1a / interferon regulatory factor 1aENSDARG0000004349227
irf6 / interferon regulatory factor 6 / O14896* / P97431*ENSDARG0000010198621
irf4a / interferon regulatory factor 4a / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000000656021
irf10 / interferon regulatory factor 10ENSDARG0000002765821
irf4b / interferon regulatory factor 4b / IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSDARG0000005537421
irf9 / interferon regulatory factor 9 / Q00978* / Q61179*ENSDARG0000001645720
irf8 / interferon regulatory factor 8 / P23611* / Q02556*ENSDARG0000005640720
irf5 / interferon regulatory factor 5 / P56477* / Q13568*ENSDARG0000004568120
irf3 / interferon regulatory factor 3 / P70671* / Q14653*ENSDARG0000007625117
irf7 / interferon regulatory factor 7 / P70434* / Q92985*ENSDARG0000004566117


Protein motifs (from Interpro)
Interpro ID Name
 IPR001346  Interferon regulatory factor DNA-binding domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017431  Interferon regulatory factor-1/2
 IPR019817  Interferon regulatory factor, conserved site
 IPR031215  Interferon regulatory factor 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0009615 response to virus IDA
 biological_processGO:0050688 regulation of defense response to virus IDA
 biological_processGO:0050776 regulation of immune response IEA
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0044212 transcription regulatory region DNA binding IGI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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