ENSGALG00000039982


Gallus gallus

Features
Gene ID: ENSGALG00000039982
  
Biological name :IRF5
  
Synonyms : Gallus gallus interferon regulatory factor 5 (IRF5), mRNA. / IRF5
  
Possible biological names infered from orthology : interferon regulatory factor 5 / P56477 / Q13568
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 664415
Gene end: 677898
  
Corresponding Affymetrix probe sets: GgaAffx.12512.1.S1_at (Chicken Array)   GgaAffx.8411.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049860
NCBI entrez gene - 430409     See in Manteia.
RefSeq - NM_001031587
RefSeq Peptide - NP_001026758
swissprot - A0A1D5PAU6
Ensembl - ENSGALG00000039982
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 irf5ENSDARG00000045681Danio rerio
 IRF5ENSG00000128604Homo sapiens
 Irf5ENSMUSG00000029771Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
IRF6 / interferon regulatory factor 6 / O14896* / P97431*ENSGALG0000000140543
IRF4 / Q15306* / Q64287* / interferon regulatory factor 4*ENSGALG0000001283026
IRF8 / Q90871 / Interferon regulatory factor 8 / P23611* / Q02556*ENSGALG0000000575725
IRF7 / interferon regulatory factor 3 / P70434* / Q92985* / interferon regulatory factor 7*ENSGALG0000001429723
IRF9 / interferon regulatory factor 9 ENSGALG0000003029122
IRF2 / Q98925 / Interferon regulatory factor 2 / P14316* / P23906*ENSGALG0000001064214
IRF1 / Q90876 / Interferon regulatory factor 1 / P10914* / P15314*ENSGALG0000000678513
IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSGALG0000004391310


Protein motifs (from Interpro)
Interpro ID Name
 IPR001346  Interferon regulatory factor DNA-binding domain
 IPR008984  SMAD/FHA domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017855  SMAD-like domain superfamily
 IPR019471  Interferon regulatory factor-3
 IPR029838  Interferon regulatory factor 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0019221 cytokine-mediated signaling pathway IEA
 biological_processGO:0032494 response to peptidoglycan IEA
 biological_processGO:0032495 response to muramyl dipeptide IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051607 defense response to virus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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