ENSGALG00000001405


Gallus gallus

Features
Gene ID: ENSGALG00000001405
  
Biological name :IRF6
  
Synonyms : interferon regulatory factor 6 / IRF6
  
Possible biological names infered from orthology : O14896 / P97431
  
Species: Gallus gallus
  
Chr. number: 26
Strand: -1
Band:
Gene start: 3166485
Gene end: 3173112
  
Corresponding Affymetrix probe sets: Gga.7980.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000039479
NCBI entrez gene - 419863     See in Manteia.
RefSeq - XM_015299039
RefSeq - XM_417990
swissprot - E1BUT7
Ensembl - ENSGALG00000001405
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 irf6ENSDARG00000101986Danio rerio
 IRF6ENSG00000117595Homo sapiens
 Irf6ENSMUSG00000026638Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
IRF5 / Gallus gallus interferon regulatory factor 5 (IRF5), mRNA. / P56477* / Q13568* / interferon regulatory factor 5*ENSGALG0000003998245
IRF8 / Q90871 / Interferon regulatory factor 8 / P23611* / Q02556*ENSGALG0000000575729
IRF4 / Q15306* / Q64287* / interferon regulatory factor 4*ENSGALG0000001283028
IRF9 / interferon regulatory factor 9 ENSGALG0000003029125
IRF7 / interferon regulatory factor 3 / P70434* / Q92985* / interferon regulatory factor 7*ENSGALG0000001429723
IRF2 / Q98925 / Interferon regulatory factor 2 / P14316* / P23906*ENSGALG0000001064217
IRF1 / Q90876 / Interferon regulatory factor 1 / P10914* / P15314*ENSGALG0000000678513
IRF4* / Q15306* / Q64287* / interferon regulatory factor 4*ENSGALG0000004391312


Protein motifs (from Interpro)
Interpro ID Name
 IPR001346  Interferon regulatory factor DNA-binding domain
 IPR008984  SMAD/FHA domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017855  SMAD-like domain superfamily
 IPR019471  Interferon regulatory factor-3
 IPR019817  Interferon regulatory factor, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007050 cell cycle arrest IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0030216 keratinocyte differentiation IEA
 biological_processGO:0043588 skin development IEA
 biological_processGO:0043616 keratinocyte proliferation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048468 cell development IEA
 biological_processGO:0060644 mammary gland epithelial cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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