ENSG00000140968


Homo sapiens

Features
Gene ID: ENSG00000140968
  
Biological name :IRF8
  
Synonyms : interferon regulatory factor 8 / IRF8 / Q02556
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q24.1
Gene start: 85898803
Gene end: 85922609
  
Corresponding Affymetrix probe sets: 204057_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000458047
Ensembl peptide - ENSP00000456395
Ensembl peptide - ENSP00000456992
Ensembl peptide - ENSP00000268638
Ensembl peptide - ENSP00000455048
Ensembl peptide - ENSP00000455452
Ensembl peptide - ENSP00000455760
Ensembl peptide - ENSP00000455784
Ensembl peptide - ENSP00000455816
NCBI entrez gene - 3394     See in Manteia.
OMIM - 601565
RefSeq - XM_017023199
RefSeq - NM_002163
RefSeq Peptide - NP_002154
swissprot - H3BQH6
swissprot - H3BQK3
swissprot - H3BRT4
swissprot - H3BT31
swissprot - H3BVC2
swissprot - H3BNX4
swissprot - Q02556
swissprot - H3BQF9
swissprot - H3BPS5
Ensembl - ENSG00000140968
  
Related genetic diseases (OMIM): 226990 - Immunodeficiency 32B, monocyte and dendritic cell deficiency, autosomal recessive, 226990
  614893 - Immunodeficiency 32A, mycobacteriosis, autosomal dominant, 614893

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 irf8ENSDARG00000056407Danio rerio
 IRF8ENSGALG00000005757Gallus gallus
 Irf8ENSMUSG00000041515Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
IRF4 / Q15306 / interferon regulatory factor 4ENSG0000013726544
IRF5 / Q13568 / interferon regulatory factor 5ENSG0000012860432
IRF6 / O14896 / interferon regulatory factor 6ENSG0000011759531
IRF9 / Q00978 / interferon regulatory factor 9ENSG0000021392831
IRF7 / Q92985 / interferon regulatory factor 7ENSG0000018550721
IRF3 / Q14653 / interferon regulatory factor 3ENSG0000012645621
IRF2 / P14316 / interferon regulatory factor 2ENSG0000016831017
IRF1 / P10914 / interferon regulatory factor 1ENSG0000012534716


Protein motifs (from Interpro)
Interpro ID Name
 IPR001346  Interferon regulatory factor DNA-binding domain
 IPR008984  SMAD/FHA domain superfamily
 IPR017855  SMAD-like domain superfamily
 IPR019471  Interferon regulatory factor-3
 IPR019817  Interferon regulatory factor, conserved site
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006909 phagocytosis IEA
 biological_processGO:0006955 immune response IEA
 biological_processGO:0009617 response to bacterium IEA
 biological_processGO:0030099 myeloid cell differentiation IEA
 biological_processGO:0032729 positive regulation of interferon-gamma production IEA
 biological_processGO:0032735 positive regulation of interleukin-12 production IEA
 biological_processGO:0042742 defense response to bacterium IEA
 biological_processGO:0042832 defense response to protozoan IEA
 biological_processGO:0044130 negative regulation of growth of symbiont in host IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0060333 interferon-gamma-mediated signaling pathway TAS
 biological_processGO:0060337 type I interferon signaling pathway TAS
 biological_processGO:0071222 cellular response to lipopolysaccharide IEA
 biological_processGO:0071346 cellular response to interferon-gamma IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
Interferon gamma signaling
Interferon alpha/beta signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000246 Sinusitis 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001945 Fever 
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 HP:0002090 Pneumonia 
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 HP:0002110 Bronchiectasis 
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 HP:0002716 Lymphadenopathy 
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 HP:0002719 Recurrent infections 
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 HP:0002721 Immunodeficiency 
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 HP:0010978 Abnormality of immune system physiology "A functional abnormality of the `immune system` (FMA:9825)." [HPO:probinson, MP:0001790]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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