ENSG00000122145


Homo sapiens

Features
Gene ID: ENSG00000122145
  
Biological name :TBX22
  
Synonyms : Q9Y458 / T-box 22 / TBX22
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q21.1
Gene start: 80014756
Gene end: 80031769
  
Corresponding Affymetrix probe sets: 224017_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000487527
Ensembl peptide - ENSP00000362390
Ensembl peptide - ENSP00000362393
NCBI entrez gene - 50945     See in Manteia.
OMIM - 300307
RefSeq - XM_011530972
RefSeq - NM_001109878
RefSeq - NM_001109879
RefSeq - NM_001303475
RefSeq - NM_016954
RefSeq - XM_005262136
RefSeq - XM_006724657
RefSeq Peptide - NP_001290404
RefSeq Peptide - NP_058650
RefSeq Peptide - NP_001103348
RefSeq Peptide - NP_001103349
swissprot - Q9Y458
swissprot - A0A0D9SGI2
Ensembl - ENSG00000122145
  
Related genetic diseases (OMIM): 302905 - ?Abruzzo-Erickson syndrome, 302905
  303400 - Cleft palate with ankyloglossia, 303400

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbx22ENSDARG00000091748Danio rerio
 TBX22ENSGALG00000004093Gallus gallus
 Tbx22ENSMUSG00000031241Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TBX15 / Q96SF7 / T-box 15ENSG0000009260745
TBX18 / O95935 / T-box 18ENSG0000011283743
TBX20 / Q9UMR3 / T-box 20ENSG0000016453232
TBX1 / O43435 / T-box 1ENSG0000018405828
TBX3 / O15119 / T-box 3ENSG0000013511127
TBX2 / Q13207 / T-box 2ENSG0000012106827
TBX10 / O75333 / T-box 10ENSG0000016780026
TBX4 / P57082 / T-box 4ENSG0000012107525
TBX5 / Q99593 / T-box 5ENSG0000008922525
TBX6 / O95947 / T-box 6ENSG0000014992223


Protein motifs (from Interpro)
Interpro ID Name
 IPR001699  Transcription factor, T-box
 IPR008967  p53-like transcription factor, DNA-binding
 IPR018186  Transcription factor, T-box, conserved site
 IPR036960  T-box superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated TAS
 biological_processGO:0007275 multicellular organism development TAS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IC
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
Show

 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
Show

 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000365 Hearing loss 
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 HP:0000400 Large ears 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000411 Protruding ears 
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
Show

 HP:0000567 Chorioretinal coloboma 
Show

 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
Show

 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
Show

 HP:0001156 Brachydactyly 
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0001831 Brachydactyly (feet) 
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 HP:0002974 Radioulnar synostosis "An abnormal osseous union (fusion) between the radius and the ulna." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0008743 Coronal hypospadias "A mild form of hypospadias in which the urethra opens just under the corona glandis." [HPO:curators]
Show

 HP:0009465 Ulnar deviation of fingers 
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 HP:0010296 Ankyloglossia "Short or anteriorly attached lingual frenulum associated with limited mobility of the tongue." [pmid:19125428]
Show

 HP:0010751 Chin dimple "A persistent midline depression of the skin over the fat pad of the chin." [pmid:19125436]
Show

 HP:0012368 Flat face "Absence of concavity or convexity of the face when viewed in profile." [pmid:19125436]
Show

 HP:0100542 Abnormal localization of kidneys 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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