ENSG00000135111


Homo sapiens

Features
Gene ID: ENSG00000135111
  
Biological name :TBX3
  
Synonyms : O15119 / T-box 3 / TBX3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q24.21
Gene start: 114670254
Gene end: 114684164
  
Corresponding Affymetrix probe sets: 219682_s_at (Human Genome U133 Plus 2.0 Array)   222917_s_at (Human Genome U133 Plus 2.0 Array)   225544_at (Human Genome U133 Plus 2.0 Array)   228344_s_at (Human Genome U133 Plus 2.0 Array)   229565_x_at (Human Genome U133 Plus 2.0 Array)   229576_s_at (Human Genome U133 Plus 2.0 Array)   243234_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000257566
Ensembl peptide - ENSP00000257567
NCBI entrez gene - 6926     See in Manteia.
OMIM - 601621
RefSeq - NM_016569
RefSeq - NM_005996
RefSeq Peptide - NP_005987
RefSeq Peptide - NP_057653
swissprot - O15119
swissprot - A0A024RBQ4
swissprot - A0A024RBL6
Ensembl - ENSG00000135111
  
Related genetic diseases (OMIM): 181450 - Ulnar-mammary syndrome, 181450

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbx3aENSDARG00000002216Danio rerio
 TBX3ENSGALG00000036043Gallus gallus
 Tbx3ENSMUSG00000018604Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TBX2 / Q13207 / T-box 2ENSG0000012106857
TBX5 / Q99593 / T-box 5ENSG0000008922522
TBX4 / P57082 / T-box 4ENSG0000012107522
TBX15 / Q96SF7 / T-box 15ENSG0000009260721
TBX18 / O95935 / T-box 18ENSG0000011283721
TBX10 / O75333 / T-box 10ENSG0000016780020
TBX1 / O43435 / T-box 1ENSG0000018405820
TBX20 / Q9UMR3 / T-box 20ENSG0000016453220
TBX6 / O95947 / T-box 6ENSG0000014992220
TBX22 / Q9Y458 / T-box 22ENSG0000012214519


Protein motifs (from Interpro)
Interpro ID Name
 IPR001699  Transcription factor, T-box
 IPR002070  Transcription factor, Brachyury
 IPR008967  p53-like transcription factor, DNA-binding
 IPR018186  Transcription factor, T-box, conserved site
 IPR022582  Transcription factor, T-box, region of unknown function
 IPR036960  T-box superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0001501 skeletal system development IMP
 biological_processGO:0001568 blood vessel development IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001947 heart looping IEA
 biological_processGO:0003007 heart morphogenesis IEA
 biological_processGO:0003151 outflow tract morphogenesis IEA
 biological_processGO:0003167 atrioventricular bundle cell differentiation IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007569 cell aging IDA
 biological_processGO:0008284 positive regulation of cell proliferation IDA
 biological_processGO:0008595 anterior/posterior axis specification, embryo IMP
 biological_processGO:0009887 animal organ morphogenesis IDA
 biological_processGO:0010159 specification of animal organ position IEA
 biological_processGO:0019827 stem cell population maintenance IEA
 biological_processGO:0021761 limbic system development IEA
 biological_processGO:0030539 male genitalia development IMP
 biological_processGO:0030540 female genitalia development IMP
 biological_processGO:0030857 negative regulation of epithelial cell differentiation IEA
 biological_processGO:0030879 mammary gland development IMP
 biological_processGO:0032275 luteinizing hormone secretion IMP
 biological_processGO:0035050 embryonic heart tube development IEA
 biological_processGO:0035108 limb morphogenesis IEA
 biological_processGO:0035115 embryonic forelimb morphogenesis IMP
 biological_processGO:0035116 embryonic hindlimb morphogenesis IEA
 biological_processGO:0035136 forelimb morphogenesis IDA
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0042733 embryonic digit morphogenesis IMP
 biological_processGO:0043066 negative regulation of apoptotic process IDA
 biological_processGO:0045662 negative regulation of myoblast differentiation IDA
 biological_processGO:0045787 positive regulation of cell cycle IDA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0046884 follicle-stimulating hormone secretion IMP
 biological_processGO:0048332 mesoderm morphogenesis IMP
 biological_processGO:0055007 cardiac muscle cell differentiation IEA
 biological_processGO:0060021 roof of mouth development IEA
 biological_processGO:0060412 ventricular septum morphogenesis IEA
 biological_processGO:0060444 branching involved in mammary gland duct morphogenesis IEA
 biological_processGO:0060596 mammary placode formation IEA
 biological_processGO:0060923 cardiac muscle cell fate commitment IEA
 biological_processGO:0060931 sinoatrial node cell development IEA
 biological_processGO:0090398 cellular senescence IDA
 biological_processGO:2000648 positive regulation of stem cell proliferation IEA
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding ISS
 molecular_functionGO:0001102 RNA polymerase II activating transcription factor binding ISS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000049 Shawl scrotum "A condition in which the upper scrotal skin rises over the base of the penis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000089 Renal hypoplasia 
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 HP:0000130 Abnormality of the uterus "An abnormality of the uterus (womb)." [HPO:curators]
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 HP:0000144 Decreased fertility 
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000823 Delayed puberty 
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 HP:0000882 Hypoplastic scapulae 
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 HP:0000889 Abnormality of the clavicles "Any abnormality of the clavicles (collar bones)." [HPO:curators]
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 HP:0000894 Short clavicles 
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 HP:0000912 Sprengel anomaly "A complex deformity characterized by congenital elevation of the scapula." [HPO:curators]
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001163 Abnormality of the metacarpal bones 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001601 Laryngomalacia 
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 HP:0001607 Subglottic stenosis 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0002021 Pyloric stenosis 
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002025 Anal stenosis "Abnormal narrowing of the anal opening." [HPO:curators]
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 HP:0002215 Sparse axillary hair 
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 HP:0002221 Absent axillary hair 
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 HP:0002557 Hypoplastic nipples 
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 HP:0002818 Abnormality of the radius 
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 HP:0002984 Hypoplasia of the radius "Underdevelopment of the radius." [HPO:curators]
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 HP:0003019 Abnormality of the wrist "Abnormalitly of the wrist, the structure connecting the hand and the forearm." [HPO:curators]
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 HP:0003022 Hypoplasia of the ulna "Underdevelopment of the ulna." [HPO:curators]
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 HP:0003063 Abnormality of the humerus "An abnormality of the humerus (i.e., upper arm bone)." [HPO:curators]
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 HP:0003186 Inverted nipples "The presence of nipples that instead of pointing outward are retracted inwards." [HPO:sdoelken]
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 HP:0003187 Breast hypoplasia 
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 HP:0003974 Absent ossification/absence of radius 
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 HP:0003977 Deformed radius 
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 HP:0003982 Absent ossification/absent ulna 
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 HP:0004050 Absent hands 
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 HP:0004299 Hernia of the abdominal wall 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004370 Abnormality of temperature regulation 
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 HP:0004397 Ectopic anus "Abnormal displacement or malposition of the anus." [HPO:curators]
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 HP:0005338 Sparse lateral eyebrows 
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 HP:0005792 Humeral hypoplasia 
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 HP:0006495 Aplasia/Hypoplasia of the ulna "Absence or underdevelopment of the ulna." [HPO:curators]
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 HP:0007397 Axillary apocrine gland hypoplasia 
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 HP:0008093 Short fourth and fifth toes 
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 HP:0008736 Hypoplasia of penis 
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 HP:0009751 Aplasia of the pectoralis major muscle "Absence of the pectoralis major muscle." [HPO:curators]
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0010627 Hypoplasia of the pituitary gland "Underdevelopment of the pituitary gland." [HPO:curators]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0011755 Ectopic posterior pituitary "An abnormal anatomical location of the posterior lobe of the hypophysis, also known as the `neurohypophysis` (FMA:74628). The posterior pituitary is normally present in the dorsal portion of the sella turcica, but when ectopic is usually near the median eminence. This defect is likely to be due to abnormal migration during embryogenesis." [DDD:spark, HPO:probinson]
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 HP:0011917 Short 5th toe "Underdevelopment (hypoplasia) of the `fifth toe` (FMA:25053)." [HPO:probinson]
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 HP:0030011 Imperforate hymen "A congenital disorder where the hymen (a membrane that surrounds or partially covers the external vaginal opening) does not have an opening and completely obstructs the vagina." []
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100783 Breast aplasia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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