ENSDARG00000002216


Danio rerio

Features
Gene ID: ENSDARG00000002216
  
Biological name :tbx3a
  
Synonyms : T-box 3a / tbx3a
  
Possible biological names infered from orthology : O15119 / P70324 / T-box 3 / TBX3
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 72316803
Gene end: 72324371
  
Corresponding Affymetrix probe sets: Dr.22094.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000025722
NCBI entrez gene - 556870     See in Manteia.
RefSeq - NM_001101670
RefSeq Peptide - NP_001095140
swissprot - B8JKS6
ZFIN ID - ZDB-GENE-070209-80
Ensembl - ENSDARG00000002216
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TBX3ENSGALG00000036043Gallus gallus
 TBX3ENSG00000135111Homo sapiens
 Tbx3ENSMUSG00000018604Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbx2b / Q7ZTU9 / T-box 2b / TBX2* / Q60707* / Q13207* / T-box 2* / T-box transcription factor TBX2 *ENSDARG0000000612057
tbx2a / T-box 2a / TBX2* / Q60707* / Q13207* / T-box 2* / T-box transcription factor TBX2 *ENSDARG0000001802556
tbx3b / T-box 3bENSDARG0000006150941
tbx16 / T-box 16ENSDARG0000000732922
tbx5a / Q9IAK8 / T-box 5a / TBX5* / Q99593* / P70326* / T-box 5*ENSDARG0000002489422
tbx4 / T-box 4 / P57082* / P70325*ENSDARG0000003005822
tbx15 / T-box 15 / O70306* / Q96SF7* / T-box transcription factor TBX15 *ENSDARG0000000258221
tbx20 / Q9I9K7 / T-box 20 / Q9UMR3* / Q9ES03* / T-box transcription factor TBX20 *ENSDARG0000000515021
tbx1 / Q8AXX2 / T-box 1 / O43435*ENSDARG0000003189120
tbx6 / Q8JIS6 / T-box 6 / P70327* / O95947* / T-box transcription factor TBX6 *ENSDARG0000001178520
tbx18 / T-box 18 / O95935*ENSDARG0000003693020
tbx5b / T-box 5b / TBX5* / P70326* / Q99593* / T-box 5*ENSDARG0000009206019
tbx22 / T-box 22 / Q8K402* / Q9Y458*ENSDARG0000009174815


Protein motifs (from Interpro)
Interpro ID Name
 IPR001699  Transcription factor, T-box
 IPR002070  Transcription factor, Brachyury
 IPR008967  p53-like transcription factor, DNA-binding
 IPR018186  Transcription factor, T-box, conserved site
 IPR022582  Transcription factor, T-box, region of unknown function


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0035050 embryonic heart tube development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000051 otic vesicle otic vesicle malformed , abnormal
Show

 ZFA:0000054 pericardium pericardium swollen , abnormal
Show

 ZFA:0001315 atrioventricular canal atrioventricular canal increased width , abnormal
Show

 ZFA:0001383 fin bud fin bud decreased size , abnormal
fin bud aplastic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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