ENSDARG00000092060


Danio rerio

Features
Gene ID: ENSDARG00000092060
  
Biological name :tbx5b
  
Synonyms : T-box 5b / tbx5b
  
Possible biological names infered from orthology : P70326 / Q99593 / T-box 5 / TBX5
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 23151169
Gene end: 23161715
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000107718
Ensembl peptide - ENSDARP00000132001
NCBI entrez gene - 100004161     See in Manteia.
RefSeq - NM_001198771
RefSeq Peptide - NP_001185700
swissprot - G1K2W9
swissprot - E3W6T6
ZFIN ID - ZDB-GENE-060601-2
Ensembl - ENSDARG00000092060
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TBX5ENSGALG00000008253Gallus gallus
 TBX5ENSG00000089225Homo sapiens
 Tbx5ENSMUSG00000018263Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbx5a / Q9IAK8 / T-box 5a / TBX5* / Q99593* / P70326* / T-box 5*ENSDARG0000002489453
tbx4 / T-box 4 / P57082* / P70325*ENSDARG0000003005850
tbx2a / T-box 2a / TBX2* / Q60707* / Q13207* / T-box 2* / T-box transcription factor TBX2 *ENSDARG0000001802531
tbx3a / T-box 3a / TBX3* / O15119* / P70324* / T-box 3*ENSDARG0000000221631
tbx2b / Q7ZTU9 / T-box 2b / TBX2* / Q60707* / Q13207* / T-box 2* / T-box transcription factor TBX2 *ENSDARG0000000612031
tbx1 / Q8AXX2 / T-box 1 / O43435*ENSDARG0000003189129
tbx3b / T-box 3bENSDARG0000006150928
tbx15 / T-box 15 / O70306* / Q96SF7* / T-box transcription factor TBX15 *ENSDARG0000000258228
tbx20 / Q9I9K7 / T-box 20 / Q9UMR3* / Q9ES03* / T-box transcription factor TBX20 *ENSDARG0000000515027
tbx18 / T-box 18 / O95935*ENSDARG0000003693027
tbx16 / T-box 16ENSDARG0000000732927
tbx6 / Q8JIS6 / T-box 6 / P70327* / O95947* / T-box transcription factor TBX6 *ENSDARG0000001178525
tbx22 / T-box 22 / Q8K402* / Q9Y458*ENSDARG0000009174823


Protein motifs (from Interpro)
Interpro ID Name
 IPR001699  Transcription factor, T-box
 IPR008967  p53-like transcription factor, DNA-binding
 IPR018186  Transcription factor, T-box, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0003007 heart morphogenesis IMP
 biological_processGO:0003146 heart jogging IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0021554 optic nerve development IGI
 biological_processGO:0033339 pectoral fin development IMP
 biological_processGO:0060042 retina morphogenesis in camera-type eye IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000114 heart heart structure , abnormal
heart malformed , abnormal
heart morphology , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin decreased size , abnormal
pectoral fin immature , abnormal
pectoral fin morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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