ENSG00000089225


Homo sapiens

Features
Gene ID: ENSG00000089225
  
Biological name :TBX5
  
Synonyms : Q99593 / T-box 5 / TBX5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q24.21
Gene start: 114353931
Gene end: 114408442
  
Corresponding Affymetrix probe sets: 1563018_at (Human Genome U133 Plus 2.0 Array)   207155_at (Human Genome U133 Plus 2.0 Array)   211886_s_at (Human Genome U133 Plus 2.0 Array)   240715_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000309913
Ensembl peptide - ENSP00000337723
Ensembl peptide - ENSP00000384152
Ensembl peptide - ENSP00000433292
NCBI entrez gene - 6910     See in Manteia.
OMIM - 601620
RefSeq - XM_017019912
RefSeq - NM_000192
RefSeq - NM_080717
RefSeq - NM_181486
RefSeq Peptide - NP_542448
RefSeq Peptide - NP_852259
RefSeq Peptide - NP_000183
swissprot - Q99593
Ensembl - ENSG00000089225
  
Related genetic diseases (OMIM): 142900 - Holt-Oram syndrome, 142900

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbx5aENSDARG00000024894Danio rerio
 tbx5bENSDARG00000092060Danio rerio
 TBX5ENSGALG00000008253Gallus gallus
 Tbx5ENSMUSG00000018263Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TBX4 / P57082 / T-box 4ENSG0000012107556
TBX2 / Q13207 / T-box 2ENSG0000012106832
TBX3 / O15119 / T-box 3ENSG0000013511132
TBX1 / O43435 / T-box 1ENSG0000018405828
TBX10 / O75333 / T-box 10ENSG0000016780027
TBX15 / Q96SF7 / T-box 15ENSG0000009260727
TBX18 / O95935 / T-box 18ENSG0000011283726
TBX20 / Q9UMR3 / T-box 20ENSG0000016453226
TBX6 / O95947 / T-box 6ENSG0000014992225
TBX22 / Q9Y458 / T-box 22ENSG0000012214525


Protein motifs (from Interpro)
Interpro ID Name
 IPR001699  Transcription factor, T-box
 IPR008967  p53-like transcription factor, DNA-binding
 IPR018186  Transcription factor, T-box, conserved site
 IPR036960  T-box superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002009 morphogenesis of an epithelium IEA
 biological_processGO:0003166 bundle of His development IEA
 biological_processGO:0003181 atrioventricular valve morphogenesis IEA
 biological_processGO:0003197 endocardial cushion development IEA
 biological_processGO:0003218 cardiac left ventricle formation ISS
 biological_processGO:0003229 ventricular cardiac muscle tissue development IEA
 biological_processGO:0003281 ventricular septum development ISS
 biological_processGO:0003283 atrial septum development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0007267 cell-cell signaling IDA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0008285 negative regulation of cell proliferation IDA
 biological_processGO:0010719 negative regulation of epithelial to mesenchymal transition TAS
 biological_processGO:0030324 lung development IEA
 biological_processGO:0030326 embryonic limb morphogenesis IMP
 biological_processGO:0030336 negative regulation of cell migration IDA
 biological_processGO:0035115 embryonic forelimb morphogenesis IMP
 biological_processGO:0035136 forelimb morphogenesis IMP
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0051891 positive regulation of cardioblast differentiation IDA
 biological_processGO:0055007 cardiac muscle cell differentiation IEA
 biological_processGO:0060039 pericardium development IDA
 biological_processGO:0060044 negative regulation of cardiac muscle cell proliferation IDA
 biological_processGO:0060045 positive regulation of cardiac muscle cell proliferation IEA
 biological_processGO:0060413 atrial septum morphogenesis IEA
 biological_processGO:0060980 cell migration involved in coronary vasculogenesis TAS
 biological_processGO:0072513 positive regulation of secondary heart field cardioblast proliferation IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0032993 protein-DNA complex IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IDA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IMP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
YAP1- and WWTR1 (TAZ)-stimulated gene expression
Physiological factors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000772 Abnormality of the ribs 
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 HP:0000889 Abnormality of the clavicles "Any abnormality of the clavicles (collar bones)." [HPO:curators]
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 HP:0000894 Short clavicles 
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 HP:0000912 Sprengel anomaly "A complex deformity characterized by congenital elevation of the scapula." [HPO:curators]
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001163 Abnormality of the metacarpal bones 
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 HP:0001171 Ectrodactyly (hands) 
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 HP:0001191 Abnormality of the carpal bones "An abnormality affecting the carpal bones of the wrist (scaphoid, lunate, triquetral, pisiform, trapezium, trapezoid, capitate, hamate)." [HPO:curators]
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 HP:0001199 Triphalangeal thumb "In contrast to the metacarpals 2-5, the first metacarpal is embryologically of phalangeal origin. The thumb normally consists of the first metacarpal and a proximal and distal phalanx. All other digits have an additional middle phalanx. This term applies if the thumb has an accessory phalanx, leading to a digit like appearance of the thumb." [HPO:curators]
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 HP:0001245 Thenar hypoplasia "Underdevelopment of the thenar eminence." [HPO:curators]
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 HP:0001377 Limited elbow extension 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001679 Abnormalities of the aorta 
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 HP:0001684 Secundum atrial septal defect 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002943 Thoracic scoliosis 
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 HP:0002974 Radioulnar synostosis "An abnormal osseous union (fusion) between the radius and the ulna." [HPO:curators]
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 HP:0002984 Hypoplasia of the radius "Underdevelopment of the radius." [HPO:curators]
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 HP:0003022 Hypoplasia of the ulna "Underdevelopment of the ulna." [HPO:curators]
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 HP:0003063 Abnormality of the humerus "An abnormality of the humerus (i.e., upper arm bone)." [HPO:curators]
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 HP:0003468 Abnormalities of the vertebrae 
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 HP:0003974 Absent ossification/absence of radius 
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 HP:0003982 Absent ossification/absent ulna 
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 HP:0004383 Hypoplastic left heart 
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 HP:0004757 paroxysmal atrial fibrillation 
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 HP:0005792 Humeral hypoplasia 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006501 Aplasia/Hypoplasia of the radius "A small/hypoplastic or absent/aplastic radius." [HPO:curators]
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 HP:0006695 Tricuspid and mitral valves are replaced by a single inlet valve 
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 HP:0009751 Aplasia of the pectoralis major muscle "Absence of the pectoralis major muscle." [HPO:curators]
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 HP:0009777 Aplasia of the thumb "Absent thumb." [HPO:curators]
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 HP:0009829 Phocomelia "Missing or malformed long bones of the extremities with the distal parts (such as hands and/or feet) connected to the variably shortened or even absent extremity, leading to a flipper-like appearance, as opposed to other forms of limb malformations were either the hole limb is missing (such as amelia), or the distal part of a limb is absent (peromelia)." [HPO:curators]
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 HP:0009944 Partial duplication of the phalanges of the thumb "A partial duplication, depending on severity leading to a broad or bifid appearance, affecting one or more of the phalanges of the thumb. As opposed to a complete duplication there is still a variable degree of fusion between the duplicated bones." [HPO:curators]
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 HP:0010772 Anomalous pulmonary venous return "A developmental defect characterized by abnormal connection of or more pulmonary veins to the superior or inferior vena cava, the right atrium, or the coronary sinus, resulting in a left-to-right shunt of oxygenated blood." [HPO:probinson]
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 HP:0011304 Broad thumb "Increased thumb width without increased dorso-ventral dimension." [pmid:19125433]
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 HP:0011705 First degree atrioventricular block "Delay of conduction through the atrioventricular node, which is manifested as prolongation of the PR interval in the electrocardiogram (EKG). All atrial impulses reach the ventricles." [DDD:dbrown, HPO:probinson]
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 HP:0011927 Short digit "One or more digit that appears disproportionately short compared to the hand/foot, whereby either the entire digit or a specific phalanx is shortened." [HPO:probinson]
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 HP:0040019 Finger clinodactyly 
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 HP:0200021 Rounded shoulders 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000114166 KAT2B / Q92831 / lysine acetyltransferase 2B  / reaction / complex
 ENSG00000018408 WWTR1 / Q9GZV5 / WW domain containing transcription regulator 1  / reaction / complex






 

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