ENSG00000092607


Homo sapiens

Features
Gene ID: ENSG00000092607
  
Biological name :TBX15
  
Synonyms : Q96SF7 / T-box 15 / TBX15
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p12
Gene start: 118883046
Gene end: 118989556
  
Corresponding Affymetrix probe sets: 230438_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000207157
Ensembl peptide - ENSP00000358437
Ensembl peptide - ENSP00000398625
NCBI entrez gene - 6913     See in Manteia.
OMIM - 604127
RefSeq - XM_011542052
RefSeq - NM_152380
RefSeq - XM_005271161
RefSeq - XM_005271162
RefSeq Peptide - NP_001317606
RefSeq Peptide - NP_689593
swissprot - Q96SF7
swissprot - Q5JT55
Ensembl - ENSG00000092607
  
Related genetic diseases (OMIM): 260660 - Cousin syndrome, 260660

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbx15ENSDARG00000002582Danio rerio
 TBX15ENSGALG00000014776Gallus gallus
 Tbx15ENSMUSG00000027868Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TBX18 / O95935 / T-box 18ENSG0000011283756
TBX22 / Q9Y458 / T-box 22ENSG0000012214539
TBX20 / Q9UMR3 / T-box 20ENSG0000016453229
TBX1 / O43435 / T-box 1ENSG0000018405827
TBX3 / O15119 / T-box 3ENSG0000013511126
TBX2 / Q13207 / T-box 2ENSG0000012106826
TBX4 / P57082 / T-box 4ENSG0000012107524
TBX5 / Q99593 / T-box 5ENSG0000008922524
TBX10 / O75333 / T-box 10ENSG0000016780024
TBX6 / O95947 / T-box 6ENSG0000014992221


Protein motifs (from Interpro)
Interpro ID Name
 IPR001699  Transcription factor, T-box
 IPR008967  p53-like transcription factor, DNA-binding
 IPR018186  Transcription factor, T-box, conserved site
 IPR036960  T-box superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:1903507 negative regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0070722 Tle3-Aes complex IEA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000033 Ambiguous genitalia, male 
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 HP:0000061 Ambiguous genitalia, female 
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 HP:0000126 Hydronephrosis 
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 HP:0000171 Microglossia 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000316 Hypertelorism 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000402 Stenotic external auditory canal "An abnormal narrowing of the external auditory canal." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000882 Hypoplastic scapulae 
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 HP:0000890 Long clavicles 
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 HP:0000946 Hypoplastic ilia 
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 HP:0001156 Brachydactyly 
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 HP:0001239 Wrist contractures 
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 HP:0001374 Congenital hip dislocation 
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 HP:0001591 Bell-shaped chest 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001999 Facial dysmorphism 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002162 Low posterior hairline 
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 HP:0002324 Hydranencephaly 
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 HP:0002693 Abnormality of the skull base "An abnormality of the base of the skull, which forms the floor of the cranial cavity and separates the brain from other facial structures. The skull base is made up of five bones: the ethmoid, sphenoid, occipital, paired frontal, and paired parietal bones, and is subdivided into 3 regions: the anterior, middle, and posterior cranial fossae. The petro-occipital fissure subdivides the middle cranial fossa into 1 central component and 2 lateral components." [HPO:curators]
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 HP:0002866 Hypoplastic iliac wings 
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 HP:0002987 Elbow contractures 
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 HP:0002990 Fibular aplasia "Absence of the fibula." [HPO:curators]
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 HP:0003027 Mesomelia "Shortening of the middle parts of the limbs (forearm and lower leg) in relation to the upper and terminal segments." [HPO:sdoelken]
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 HP:0003041 Radiohumeral synostosis "An abnormal osseous union (fusion) between the radius and the humerus." [HPO:curators]
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 HP:0003083 Dislocated radial head "A dislocation of the head of the radius from its socket in the elbow joint." [HPO:curators]
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 HP:0003097 Short femur "An abnormal shortening of the thigh bones." [HPO:curators]
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 HP:0003173 Hypoplastic pubic bones 
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 HP:0003175 Hypoplastic ischia 
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 HP:0003943 Abnormality of the joint spaces of the elbow 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0004692 4-5 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes four and five." [HPO:sdoelken]
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 HP:0004987 Mesomelia of the lower limbs "Shortening of the middle parts of the leg in relation to the upper and terminal segments." [HPO:sdoelken]
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 HP:0005989 Redundant neck skin 
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 HP:0006077 Absent proximal finger flexion creases 
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 HP:0008472 Prominent protruding coccyx 
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 HP:0008488 Anterior rounding of vertebral bodies 
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 HP:0008905 Rhizomelic short stature 
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 HP:0009085 Alveolar ridge overgrowth "Increased width of the alveolar ridges ." [pmid:19125428]
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0009937 Facial hirsutism "Excess facial hair." [HPO:curators]
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 HP:0011266 Microtia, first degree "Presence of all the normal ear components and the median longitudinal length more than two standard deviations below the mean." [pmid:19152421]
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0012745 Short palpebral fissure "Distance between the medial and lateral canthi is more than 2 SD below the mean for age (objective); or, apparently reduced length of the palpebral fissures." [pmid:19125427]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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