ENSG00000121075


Homo sapiens

Features
Gene ID: ENSG00000121075
  
Biological name :TBX4
  
Synonyms : P57082 / T-box 4 / TBX4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q23.2
Gene start: 61452404
Gene end: 61485110
  
Corresponding Affymetrix probe sets: 220634_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000377435
Ensembl peptide - ENSP00000495714
Ensembl peptide - ENSP00000495986
Ensembl peptide - ENSP00000240335
Ensembl peptide - ENSP00000467588
NCBI entrez gene - 9496     See in Manteia.
OMIM - 601719
RefSeq - XM_011525495
RefSeq - NM_001321120
RefSeq - NM_018488
RefSeq - XM_011525490
RefSeq - XM_011525491
RefSeq Peptide - NP_001308049
RefSeq Peptide - NP_060958
swissprot - P57082
swissprot - K7EPY2
Ensembl - ENSG00000121075
  
Related genetic diseases (OMIM): 147891 - Ischiocoxopodopatellar syndrome, 147891

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbx4ENSDARG00000030058Danio rerio
 TBX4ENSGALG00000005285Gallus gallus
 Tbx4ENSMUSG00000000094Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TBX5 / Q99593 / T-box 5ENSG0000008922553
TBX3 / O15119 / T-box 3ENSG0000013511130
TBX2 / Q13207 / T-box 2ENSG0000012106829
TBX1 / O43435 / T-box 1ENSG0000018405827
TBX18 / O95935 / T-box 18ENSG0000011283727
TBX15 / Q96SF7 / T-box 15ENSG0000009260727
TBX20 / Q9UMR3 / T-box 20ENSG0000016453225
TBX10 / O75333 / T-box 10ENSG0000016780025
TBX22 / Q9Y458 / T-box 22ENSG0000012214524
TBX6 / O95947 / T-box 6ENSG0000014992223


Protein motifs (from Interpro)
Interpro ID Name
 IPR001699  Transcription factor, T-box
 IPR002070  Transcription factor, Brachyury
 IPR008967  p53-like transcription factor, DNA-binding
 IPR018186  Transcription factor, T-box, conserved site
 IPR036960  T-box superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0002009 morphogenesis of an epithelium IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development NAS
 biological_processGO:0030324 lung development IEA
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0035108 limb morphogenesis IMP
 biological_processGO:0048705 skeletal system morphogenesis IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding NAS
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000049 Shawl scrotum "A condition in which the upper scrotal skin rises over the base of the penis." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000389 Chronic otitis media 
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 HP:0000411 Protruding ears 
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 HP:0000414 Bulbous nose 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000498 Blepharitis "Inflammation of the eyelids." [HPO:curators]
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000687 Widely spaced teeth 
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0000750 Impaired language development 
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 HP:0000960 Sacral dimple "A subtype of `skin dimples` (HP:0010781) presenting as an indentation in the skin of the intergluteal cleft ." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001376 Decreased mobility of joints 
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 HP:0001385 Hip dysplasia 
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002092 Pulmonary hypertension 
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 HP:0002094 Dyspnea 
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 HP:0002553 Arched eyebrows 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002803 Congenital contractures 
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 HP:0002812 Coxa vara 
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 HP:0002999 Dislocation of patella "The kneecap normally is located within the groove termed trochlea on the distal femur and can slide up and down in it. Patellar dislocation occurs if the patella fully dislocates out of the groove." [HPO:curators]
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 HP:0003065 Patellar hypoplasia "Underdevelopment of the patella." [HPO:curators]
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 HP:0003097 Short femur "An abnormal shortening of the thigh bones." [HPO:curators]
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 HP:0003182 Shallow acetabular fossae 
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 HP:0003279 Coxa magna 
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 HP:0003370 Flat capital femoral epiphyses 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005682 Talocalcaneal synostosis 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006443 Patellar aplasia "Absence of the patella." [HPO:curators]
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 HP:0006498 Aplasia/Hypoplasia of the patella "Absence or underdevelopment of the patella." [HPO:curators]
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 HP:0007598 Bilateral single palmar creases 
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 HP:0008784 Flat, wide capital femoral epiphyses 
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 HP:0008801 Lesser trochanter hypoplasia 
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 HP:0010511 Increased length of toes "The presence of abnormally long toes." [HPO:curators]
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 HP:0011342 Mild global developmental delay "A mild delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0011343 Moderate global developmental delay "A moderate delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0011803 Bifid nose "Visually assessable vertical indentation, cleft, or depression of the nasal bridge, ridge and tip." [pmid:19152422]
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 HP:0100807 Long fingers "The middle finger is more than 2 SD above the mean for newborns 27 to 41 weeks EGA or above the 97th centile for children from birth to 16 years of age AND the five digits retain their normal length proportions relative to each other (i.e., it is not the case that the middle finger is the only lengthened digit), or, Fingers that appear disproportionately long compared to the palm of the hand." [pmid:19125433]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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