ENSG00000149922


Homo sapiens

Features
Gene ID: ENSG00000149922
  
Biological name :TBX6
  
Synonyms : O95947 / T-box 6 / TBX6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: p11.2
Gene start: 30085793
Gene end: 30091887
  
Corresponding Affymetrix probe sets: 207684_at (Human Genome U133 Plus 2.0 Array)   215122_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000461223
Ensembl peptide - ENSP00000485762
Ensembl peptide - ENSP00000279386
Ensembl peptide - ENSP00000378650
Ensembl peptide - ENSP00000460425
NCBI entrez gene - 6911     See in Manteia.
OMIM - 602427
RefSeq - XM_011545926
RefSeq - XM_017023614
RefSeq - NM_004608
RefSeq - XM_005255523
RefSeq Peptide - NP_004599
swissprot - O95947
swissprot - A0A0D9SEK4
Ensembl - ENSG00000149922
  
Related genetic diseases (OMIM): 122600 - Spondylocostal dysostosis 5, 122600

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbx6ENSDARG00000011785Danio rerio
 TBX6ENSGALG00000006374Gallus gallus
 Tbx6ENSMUSG00000030699Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TBX2 / Q13207 / T-box 2ENSG0000012106835
TBX3 / O15119 / T-box 3ENSG0000013511134
TBX5 / Q99593 / T-box 5ENSG0000008922530
TBX1 / O43435 / T-box 1ENSG0000018405830
TBX15 / Q96SF7 / T-box 15ENSG0000009260729
TBX18 / O95935 / T-box 18ENSG0000011283729
TBX22 / Q9Y458 / T-box 22ENSG0000012214528
TBX10 / O75333 / T-box 10ENSG0000016780028
TBX4 / P57082 / T-box 4ENSG0000012107528
TBX20 / Q9UMR3 / T-box 20ENSG0000016453226


Protein motifs (from Interpro)
Interpro ID Name
 IPR001699  Transcription factor, T-box
 IPR002070  Transcription factor, Brachyury
 IPR008967  p53-like transcription factor, DNA-binding
 IPR018186  Transcription factor, T-box, conserved site
 IPR036960  T-box superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II ISS
 biological_processGO:0001707 mesoderm formation IEA
 biological_processGO:0001708 cell fate specification IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007498 mesoderm development TAS
 biological_processGO:0009653 anatomical structure morphogenesis TAS
 biological_processGO:0010977 negative regulation of neuron projection development IEA
 biological_processGO:0014043 negative regulation of neuron maturation IEA
 biological_processGO:0023019 signal transduction involved in regulation of gene expression IEA
 biological_processGO:0032525 somite rostral/caudal axis specification IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding ISS
 molecular_functionGO:0001102 RNA polymerase II activating transcription factor binding ISS
 molecular_functionGO:0001191 transcriptional repressor activity, RNA polymerase II transcription factor binding ISS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000008 Abnormality of female internal genitalia 
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
Show

 HP:0000269 Prominent occiput 
Show

 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
Show

 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
Show

 HP:0000470 Short neck 
Show

 HP:0000582 Upslanting palpebral fissures 
Show

 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
Show

 HP:0000913 Posterior rib fusion 
Show

 HP:0000921 Missing ribs 
Show

 HP:0001511 Intrauterine growth retardation 
Show

 HP:0002205 Recurrent respiratory infections 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002937 Hemivertebrae 
Show

 HP:0002948 Vertebral fusion "A developmental defect leading to the union of two adjacent vertebrae." [HPO:curators]
Show

 HP:0003298 Spina bifida occulta "The closed form of spina bifida." [HPO:curators]
Show

 HP:0003307 Hyperlordosis 
Show

 HP:0003316 Butterfly vertebrae 
Show

 HP:0003396 Syringomyelia 
Show

 HP:0003419 Low back pain 
Show

 HP:0003422 Vertebral segmentation defects 
Show

 HP:0003510 Short stature, severe "A severe degree of short stature." [HPO:curators]
Show

 HP:0003521 Short stature, disproportionate (short trunk) 
Show

 HP:0005107 Abnormality of the sacrum 
Show

 HP:0005815 Supernumerary ribs 
Show

 HP:0010306 Short thorax "Reduced inferior to superior extent of the thorax." [HPO:curators]
Show

 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr