ENSG00000123240


Homo sapiens

Features
Gene ID: ENSG00000123240
  
Biological name :OPTN
  
Synonyms : optineurin / OPTN / Q96CV9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: p13
Gene start: 13099449
Gene end: 13138308
  
Corresponding Affymetrix probe sets: 202073_at (Human Genome U133 Plus 2.0 Array)   202074_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000400356
Ensembl peptide - ENSP00000484961
Ensembl peptide - ENSP00000481473
Ensembl peptide - ENSP00000414747
Ensembl peptide - ENSP00000263036
Ensembl peptide - ENSP00000368021
Ensembl peptide - ENSP00000368022
Ensembl peptide - ENSP00000368027
Ensembl peptide - ENSP00000368032
Ensembl peptide - ENSP00000368040
NCBI entrez gene - 10133     See in Manteia.
OMIM - 602432
RefSeq - NM_001008212
RefSeq - NM_001008213
RefSeq - NM_021980
RefSeq - NM_001008211
RefSeq Peptide - NP_001008212
RefSeq Peptide - NP_001008214
RefSeq Peptide - NP_068815
RefSeq Peptide - NP_001008213
swissprot - X6RKL2
swissprot - A0A087WY28
swissprot - H7C1H4
swissprot - Q96CV9
swissprot - A0A087X2G2
Ensembl - ENSG00000123240
  
Related genetic diseases (OMIM): 137760 - Glaucoma 1, open angle, E, 137760
  606657 - {Glaucoma, normal tension, susceptibility to}, 606657
  613435 - Amyotrophic lateral sclerosis 12, 613435
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 optnENSDARG00000002663Danio rerio
 OPTNENSGALG00000013738Gallus gallus
 OptnENSMUSG00000026672Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
IKBKG / Q9Y6K9 / inhibitor of nuclear factor kappa B kinase subunit gammaENSG0000026933520


Protein motifs (from Interpro)
Interpro ID Name
 IPR021063  NF-kappa-B essential modulator NEMO, N-terminal
 IPR032419  NF-kappa-B essential modulator NEMO, CC2-LZ domain
 IPR032939  Optineurin
 IPR034735  NEMO, Zinc finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000086 G2/M transition of mitotic cell cycle TAS
 biological_processGO:0001920 negative regulation of receptor recycling IMP
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0007030 Golgi organization IMP
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0008219 cell death TAS
 biological_processGO:0010508 positive regulation of autophagy IDA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0034067 protein localization to Golgi apparatus IMP
 biological_processGO:0034613 cellular protein localization IEA
 biological_processGO:0034620 cellular response to unfolded protein IMP
 biological_processGO:0043001 Golgi to plasma membrane protein transport IMP
 biological_processGO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling IBA
 biological_processGO:0043124 negative regulation of I-kappaB kinase/NF-kappaB signaling IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0050829 defense response to Gram-negative bacterium IMP
 biological_processGO:0061734 parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization IMP
 biological_processGO:0090161 Golgi ribbon formation IMP
 biological_processGO:1904417 positive regulation of xenophagy IMP
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005776 autophagosome IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0055037 recycling endosome IEA
 cellular_componentGO:0055038 recycling endosome membrane TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0017137 Rab GTPase binding IPI
 molecular_functionGO:0030674 protein binding, bridging IPI
 molecular_functionGO:0031593 polyubiquitin modification-dependent protein binding IDA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070530 K63-linked polyubiquitin modification-dependent protein binding IEA


Pathways (from Reactome)
Pathway description
Regulation of PLK1 Activity at G2/M Transition
TBC/RABGAPs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
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 HP:0000545 Myopia 
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 HP:0000712 Emotional lability 
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 HP:0000713 Agitation 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000739 Anxiety 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001308 Tongue fasciculations 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002094 Dyspnea 
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 HP:0002180 Neurodegeneration 
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 HP:0002878 Early respiratory failure 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003394 Muscle cramps 
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 HP:0003470 Paralysis "Paralysis of voluntary muscles means loss of contraction due to interruption of one or more motor pathways from the brain to the muscle fibers. Although the word paralysis is often used interchangeably to mean either complete or partial loss of muscle strength, it is preferable to use paralysis or plegia for complete or severe loss of muscle strength, and paresis for partial or slight loss. Motor paralysis results from deficits of the upper motor neurons (corticospinal, corticobulbar, or subcorticospinal). Motor paralysis is often accompanied by an impairment in the facility of movement." [HPO:curators]
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 HP:0005945 Laryngeal obstruction 
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 HP:0007354 Amyotrophic lateral sclerosis 
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 HP:0012108 Primary open angle glaucoma "A type of glaucoma with optic nerve damage in an eye with evidence of significant obstruction of the functional trabecular meshwork by the peripheral iris would be classified as having primary angle closure." [HPO:probinson, pmid:11815354]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012531 Pain "An unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage." [ORCID:0000-0001-5208-3432]
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 HP:0030195 Fatigable weakness of swallowing muscles "A type of weakness of the muscles involved in swallowing that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [pmid:17986328, UK:rheller]
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 HP:0030196 Fatigable weakness of respiratory muscles "A type of weakness of the muscles involved in breathing (respiration) that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [UNCL:mbertoli]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000167461 RAB8A / P61006 / RAB8A, member RAS oncogene family  / complex
 ENSG00000166128 RAB8B / Q92930 / RAB8B, member RAS oncogene family  / complex
 ENSG00000104946 Q9HA65 / TBC1D17 / TBC1 domain family member 17  / reaction / complex
 ENSG00000166851 PLK1 / P53350 / polo like kinase 1  / reaction






 

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