ENSG00000124006


Homo sapiens

Features
Gene ID: ENSG00000124006
  
Biological name :OBSL1
  
Synonyms : O75147 / obscurin like 1 / OBSL1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q35
Gene start: 219550729
Gene end: 219571859
  
Corresponding Affymetrix probe sets: 212775_at (Human Genome U133 Plus 2.0 Array)   212776_s_at (Human Genome U133 Plus 2.0 Array)   213946_s_at (Human Genome U133 Plus 2.0 Array)   214928_at (Human Genome U133 Plus 2.0 Array)   227573_s_at (Human Genome U133 Plus 2.0 Array)   227574_at (Human Genome U133 Plus 2.0 Array)   238776_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000403665
Ensembl peptide - ENSP00000385636
Ensembl peptide - ENSP00000474519
Ensembl peptide - ENSP00000475126
Ensembl peptide - ENSP00000289656
Ensembl peptide - ENSP00000362980
Ensembl peptide - ENSP00000362983
NCBI entrez gene - 23363     See in Manteia.
OMIM - 610991
RefSeq - XM_017003700
RefSeq - XM_011510863
RefSeq - XM_011510864
RefSeq - XM_011510865
RefSeq - XM_011510866
RefSeq - XM_017003696
RefSeq - XM_017003697
RefSeq - XM_017003698
RefSeq - XM_017003699
RefSeq - NM_001173408
RefSeq - NM_001173431
RefSeq - NM_015311
RefSeq - XM_005246424
RefSeq - XM_005246427
RefSeq - XM_011510857
RefSeq Peptide - NP_001166879
RefSeq Peptide - NP_001166902
RefSeq Peptide - NP_056126
swissprot - S4R463
swissprot - A8MSZ8
swissprot - A6NN50
swissprot - H0Y684
swissprot - O75147
Ensembl - ENSG00000124006
  
Related genetic diseases (OMIM): 612921 - 3-M syndrome 2, 612921
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 obsl1aENSDARG00000003684Danio rerio
 obsl1bENSDARG00000077388Danio rerio
 OBSL1ENSGALG00000011242Gallus gallus
 Obsl1ENSMUSG00000026211Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
OBSCN / Q5VST9 / obscurin, cytoskeletal calmodulin and titin-interacting RhoGEFENSG0000015435834
HMCN2 / Q8NDA2 / hemicentin 2ENSG0000014835720
HMCN1 / Q96RW7 / hemicentin 1ENSG0000014334119
TTN / titin / Q8WZ42ENSG0000015565719
MXRA5 / Q9NR99 / matrix remodeling associated 5ENSG000001018259
IGSF10 / Q6WRI0 / immunoglobulin superfamily member 10ENSG000001525808
MYPN / Q86TC9 / myopalladinENSG000001383473
PALLD / Q8WX93 / palladin, cytoskeletal associated proteinENSG000001291162
MYOT / Q9UBF9 / myotilinENSG000001207290


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR036116  Fibronectin type III superfamily
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000226 microtubule cytoskeleton organization IMP
 biological_processGO:0006941 striated muscle contraction IBA
 biological_processGO:0007010 cytoskeleton organization NAS
 biological_processGO:0007015 actin filament organization IBA
 biological_processGO:0007030 Golgi organization IMP
 biological_processGO:0007088 regulation of mitotic nuclear division IMP
 biological_processGO:0034067 protein localization to Golgi apparatus IMP
 biological_processGO:0043687 post-translational protein modification TAS
 biological_processGO:0045214 sarcomere organization IBA
 biological_processGO:0050775 positive regulation of dendrite morphogenesis IMP
 biological_processGO:0055003 cardiac myofibril assembly NAS
 biological_processGO:0071688 striated muscle myosin thick filament assembly IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005859 muscle myosin complex IBA
 cellular_componentGO:0014704 intercalated disc TAS
 cellular_componentGO:0030018 Z disc TAS
 cellular_componentGO:0031430 M band TAS
 cellular_componentGO:0048471 perinuclear region of cytoplasm TAS
 cellular_componentGO:1990393 3M complex IDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008093 cytoskeletal adaptor activity NAS
 molecular_functionGO:0008307 structural constituent of muscle IBA
 molecular_functionGO:0051015 actin filament binding IBA
 molecular_functionGO:0051371 muscle alpha-actinin binding IBA
 molecular_functionGO:0097493 structural molecule activity conferring elasticity IBA


Pathways (from Reactome)
Pathway description
Neddylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000144 Decreased fertility 
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 HP:0000232 Everted lower lip 
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 HP:0000268 Dolichocephaly 
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000307 Pointed chin 
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 HP:0000325 Triangular facies 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000411 Protruding ears 
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 HP:0000414 Bulbous nose 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000574 Thick eyebrows 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000883 Thin ribs 
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 HP:0000888 Short, horizontal ribs 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0001374 Congenital hip dislocation 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001838 Vertical talus 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002983 Micromelia 
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 HP:0003022 Hypoplasia of the ulna "Underdevelopment of the ulna." [HPO:curators]
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 HP:0003100 Thin long bones 
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 HP:0003173 Hypoplastic pubic bones 
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 HP:0003175 Hypoplastic ischia 
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 HP:0003307 Hyperlordosis 
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 HP:0003691 Scapular winging 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004570 Increased vertebral height 
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 HP:0005274 Prominent nasal tip 
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 HP:0005692 Joint hyperflexibility 
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 HP:0008839 Hypoplastic pelvis 
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 HP:0009811 Abnormality of the elbow 
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 HP:0010306 Short thorax "Reduced inferior to superior extent of the thorax." [HPO:curators]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0012428 Prominent calcaneus "Protruding heel bone, or `calcaneus`(FMA:24496)." [ORCID:0000-0001-5208-3432]
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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 HP:0100625 Enlarged thorax 
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 HP:0100659 Abnormality of the cerebral vasculature 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000044090 CUL7 / Q14999 / cullin 7  / complex
 ENSG00000129559 NEDD8 / Q15843 / neural precursor cell expressed, developmentally down-regulated 8  / complex / reaction
 ENSG00000100387 RBX1 / P62877 / ring-box 1  / reaction / complex
 ENSG00000112659 CUL9 / Q8IWT3 / cullin 9  / complex / reaction
 ENSG00000169515 CCDC8 / Q9H0W5 / coiled-coil domain containing 8  / complex






 

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