ENSG00000135249


Homo sapiens

Features
Gene ID: ENSG00000135249
  
Biological name :RINT1
  
Synonyms : Q6NUQ1 / RAD50 interactor 1 / RINT1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: q22.3
Gene start: 105532085
Gene end: 105567677
  
Corresponding Affymetrix probe sets: 218598_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000257700
Ensembl peptide - ENSP00000417954
Ensembl peptide - ENSP00000418805
Ensembl peptide - ENSP00000420582
Ensembl peptide - ENSP00000417107
NCBI entrez gene - 60561     See in Manteia.
OMIM - 610089
RefSeq - XM_017012498
RefSeq - NM_001346600
RefSeq - NM_001346601
RefSeq - NM_021930
RefSeq - XM_005250524
RefSeq - XM_011516458
RefSeq - XM_017012496
RefSeq - XM_017012497
RefSeq Peptide - NP_001333529
RefSeq Peptide - NP_068749
RefSeq Peptide - NP_001333530
swissprot - F8WDC5
swissprot - C9J5S3
swissprot - Q6NUQ1
swissprot - F8WAZ2
swissprot - F8WC46
Ensembl - ENSG00000135249
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rint1ENSDARG00000005547Danio rerio
 RINT1ENSGALG00000008123Gallus gallus
 Rint1ENSMUSG00000028999Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007528  RINT-1/Tip20


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER TAS
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0048193 Golgi vesicle transport IEA
 biological_processGO:0060628 regulation of ER to Golgi vesicle-mediated transport IMP
 biological_processGO:1902504 regulation of signal transduction involved in mitotic G2 DNA damage checkpoint IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0070939 Dsl1/NZR complex IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000086827 ZW10 / O43264 / zw10 kinetochore protein  / complex
 ENSG00000168818 STX18 / Q9P2W9 / syntaxin 18  / reaction
 ENSG00000113734 BNIP1 / Q12981 / BCL2 interacting protein 1  / reaction
 ENSG00000053501 USE1 / Q9NZ43 / unconventional SNARE in the ER 1  / reaction
 ENSG00000151779 NBAS / A2RRP1 / neuroblastoma amplified sequence  / complex






 

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