ENSG00000151779


Homo sapiens

Features
Gene ID: ENSG00000151779
  
Biological name :NBAS
  
Synonyms : A2RRP1 / NBAS / neuroblastoma amplified sequence
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p24.3
Gene start: 15166909
Gene end: 15561330
  
Corresponding Affymetrix probe sets: 202926_at (Human Genome U133 Plus 2.0 Array)   240579_at (Human Genome U133 Plus 2.0 Array)   242049_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000398411
Ensembl peptide - ENSP00000396501
Ensembl peptide - ENSP00000402458
Ensembl peptide - ENSP00000403119
Ensembl peptide - ENSP00000281513
Ensembl peptide - ENSP00000390920
Ensembl peptide - ENSP00000391476
Ensembl peptide - ENSP00000392421
NCBI entrez gene - 51594     See in Manteia.
OMIM - 608025
RefSeq - XM_017004317
RefSeq - NM_015909
RefSeq - XM_011510357
RefSeq - XM_011510358
RefSeq - XM_011510359
RefSeq - XM_011510360
RefSeq - XM_011510361
RefSeq Peptide - NP_056993
swissprot - A2RRP1
swissprot - C9JCM7
swissprot - H0Y5G7
swissprot - H7BZR3
swissprot - H7BZU5
swissprot - H7C007
swissprot - H7C1Y9
swissprot - H7C1U4
Ensembl - ENSG00000151779
  
Related genetic diseases (OMIM): 614800 - Short stature, optic nerve atrophy, and Pelger-Huet anomaly, 614800
  616483 - Infantile liver failure syndrome 2, 616483
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nbasENSDARG00000008593Danio rerio
 NBASENSGALG00000042614Gallus gallus
 NbasENSMUSG00000020576Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011044  Quinoprotein amine dehydrogenase, beta chain-like
 IPR011989  Armadillo-like helical
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013244  Sec39 domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016024  Armadillo-type fold
 IPR029145  Neuroblastoma-amplified sequence, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IMP
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:2000623 negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0070939 Dsl1/NZR complex IDA
 molecular_functionGO:0000149 SNARE binding IDA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000233 Thin vermillion border 
Show

 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
Show

 HP:0000276 Long face 
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000324 Facial asymmetry 
Show

 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
Show

 HP:0000343 Long philtrum 
Show

 HP:0000470 Short neck 
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000520 Proptosis 
Show

 HP:0000540 Hypermetropia 
Show

 HP:0000545 Myopia 
Show

 HP:0000574 Thick eyebrows 
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
Show

 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
Show

 HP:0000973 Cutis laxa 
Show

 HP:0001156 Brachydactyly 
Show

 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001254 Lethargy 
Show

 HP:0001638 Cardiomyopathy 
Show

 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
Show

 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
Show

 HP:0001987 Hyperammonemia 
Show

 HP:0002013 Vomiting 
Show

 HP:0002057 Prominent glabella 
Show

 HP:0002213 Fine hair 
Show

 HP:0002480 Hepatic encephalopathy 
Show

 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
Show

 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
Show

 HP:0002983 Micromelia 
Show

 HP:0003256 Abnormalities of the clotting factors 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0006554 Acute hepatic failure "Hepatic failure refers to the inability of the liver to perform its normal synthetic and metabolic functions, which can result in coagulopathy and alteration in the mental status of a previously healthy individual. Hepatic failure is defined as acute if there is onset of encephalopathy within 8 weeks of the onset of symptoms in a patient with a previously healthy liver." [HPO:curators]
Show

 HP:0007663 Decreased central vision 
Show

 HP:0008897 Growth retardation, progressive 
Show

 HP:0200068 Nonprogressive visual loss 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000053501 USE1 / Q9NZ43 / unconventional SNARE in the ER 1  / reaction
 ENSG00000135249 RINT1 / Q6NUQ1 / RAD50 interactor 1  / complex
 ENSG00000086827 ZW10 / O43264 / zw10 kinetochore protein  / complex
 ENSG00000168818 STX18 / Q9P2W9 / syntaxin 18  / reaction
 ENSG00000113734 BNIP1 / Q12981 / BCL2 interacting protein 1  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr