ENSG00000138032


Homo sapiens

Features
Gene ID: ENSG00000138032
  
Biological name :PPM1B
  
Synonyms : O75688 / PPM1B / protein phosphatase, Mg2+/Mn2+ dependent 1B
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p21
Gene start: 44167969
Gene end: 44244384
  
Corresponding Affymetrix probe sets: 209296_at (Human Genome U133 Plus 2.0 Array)   213225_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000386982
Ensembl peptide - ENSP00000367813
Ensembl peptide - ENSP00000387287
Ensembl peptide - ENSP00000390087
Ensembl peptide - ENSP00000282412
Ensembl peptide - ENSP00000326089
NCBI entrez gene - 5495     See in Manteia.
OMIM - 603770
RefSeq - XM_017004397
RefSeq - NM_001033557
RefSeq - NM_002706
RefSeq - NM_177968
RefSeq - NM_177969
RefSeq - XM_011532936
RefSeq - XM_017004395
RefSeq - XM_017004396
RefSeq Peptide - NP_808908
RefSeq Peptide - NP_001028729
RefSeq Peptide - NP_002697
RefSeq Peptide - NP_808907
swissprot - O75688
swissprot - C9JIR6
swissprot - B8ZZF0
Ensembl - ENSG00000138032
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ppm1baENSDARG00000001888Danio rerio
 ppm1bbENSDARG00000011496Danio rerio
 PPM1BENSGALG00000030691Gallus gallus
 Ppm1bENSMUSG00000061130Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PPM1A / P35813 / protein phosphatase, Mg2+/Mn2+ dependent 1AENSG0000010061461
PPM1N / Q8N819 / protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)ENSG0000021388934


Protein motifs (from Interpro)
Interpro ID Name
 IPR000222  PPM-type phosphatase, divalent cation binding
 IPR001932  PPM-type phosphatase domain
 IPR012911  Protein serine/threonine phosphatase 2C, C-terminal
 IPR015655  Protein phosphatase 2C family
 IPR036457  PPM-type phosphatase domain superfamily
 IPR036580  Phosphatase 2C, C-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation IEA
 biological_processGO:0006499 N-terminal protein myristoylation ISS
 biological_processGO:0032688 negative regulation of interferon-beta production IMP
 biological_processGO:0035970 peptidyl-threonine dephosphorylation IDA
 biological_processGO:0043124 negative regulation of I-kappaB kinase/NF-kappaB signaling IMP
 biological_processGO:0050687 negative regulation of defense response to virus IMP
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane ISS
 molecular_functionGO:0000287 magnesium ion binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0004722 protein serine/threonine phosphatase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0030145 manganese ion binding IEA
 molecular_functionGO:0043169 cation binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
ISG15 antiviral mechanism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000787 Kidney stones 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001510 Growth retardation 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001611 Nasal speech 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002342 Mental retardation, moderate "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 35-49." [HPO:curators]
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 HP:0002901 Hypocalcemia "A level of blood calcium that is lower than normal." [HPO:curators]
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003131 Cystinuria 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0200125 Mitochondrial respiratory chain defects 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000138646 HERC5 / Q9UII4 / HECT and RLD domain containing E3 ubiquitin protein ligase 5  / reaction
 ENSG00000156587 O14933 / UBE2L6 / ubiquitin conjugating enzyme E2 L6  / reaction
 ENSG00000166233 ARIH1 / Q9Y4X5 / ariadne RBR E3 ubiquitin protein ligase 1  / reaction
 ENSG00000187608 ISG15 / P05161 / ISG15 ubiquitin-like modifier  / reaction / complex






 

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contact: otassy@igbmc.fr