ENSG00000140199


Homo sapiens

Features
Gene ID: ENSG00000140199
  
Biological name :SLC12A6
  
Synonyms : Q9UHW9 / SLC12A6 / solute carrier family 12 member 6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q14
Gene start: 34229996
Gene end: 34338060
  
Corresponding Affymetrix probe sets: 220740_s_at (Human Genome U133 Plus 2.0 Array)   223596_at (Human Genome U133 Plus 2.0 Array)   226741_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000453702
Ensembl peptide - ENSP00000453473
Ensembl peptide - ENSP00000454037
Ensembl peptide - ENSP00000454168
Ensembl peptide - ENSP00000454069
Ensembl peptide - ENSP00000290209
Ensembl peptide - ENSP00000346112
Ensembl peptide - ENSP00000380814
Ensembl peptide - ENSP00000380819
Ensembl peptide - ENSP00000387725
Ensembl peptide - ENSP00000452705
Ensembl peptide - ENSP00000452771
Ensembl peptide - ENSP00000452776
Ensembl peptide - ENSP00000452828
Ensembl peptide - ENSP00000452857
Ensembl peptide - ENSP00000452904
NCBI entrez gene - 9990     See in Manteia.
OMIM - 604878
RefSeq - NM_005135
RefSeq - NM_001042494
RefSeq - NM_001042495
RefSeq - NM_001042496
RefSeq - NM_001042497
RefSeq - NM_133647
RefSeq - XM_006720793
RefSeq - XM_011522269
RefSeq Peptide - NP_598408
RefSeq Peptide - NP_001035961
RefSeq Peptide - NP_001035962
RefSeq Peptide - NP_001035959
RefSeq Peptide - NP_001035960
RefSeq Peptide - NP_005126
swissprot - H0YKJ2
swissprot - H0YKL8
swissprot - H0YKQ8
swissprot - H0YNJ5
swissprot - H0YMQ9
swissprot - A0A024R9I5
swissprot - Q9UHW9
swissprot - B3KXX3
swissprot - A0A024R9K8
swissprot - H0YKE6
Ensembl - ENSG00000140199
  
Related genetic diseases (OMIM): 218000 - Agenesis of the corpus callosum with peripheral neuropathy, 218000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:cabz01090193.1ENSDARG00000105485Danio rerio
 Gm21985ENSMUSG00000096764Mus musculus
 Q924N4ENSMUSG00000027130Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9UP95 / SLC12A4 / solute carrier family 12 member 4ENSG0000012406770
Q9H2X9 / SLC12A5 / solute carrier family 12 member 5ENSG0000012414067
Q9Y666 / SLC12A7 / solute carrier family 12 member 7ENSG0000011350465
Q13621 / SLC12A1 / solute carrier family 12 member 1ENSG0000007480324
P55011 / SLC12A2 / solute carrier family 12 member 2ENSG0000006465124
P55017 / SLC12A3 / solute carrier family 12 member 3ENSG0000007091523
Q9BXP2 / SLC12A9 / solute carrier family 12 member 9ENSG0000014682820
A0AV02 / SLC12A8 / solute carrier family 12 member 8ENSG0000022195514


Protein motifs (from Interpro)
Interpro ID Name
 IPR000076  K/Cl co-transporter
 IPR000622  K/Cl co-transporter 1
 IPR004841  Amino acid permease/ SLC12A domain
 IPR004842  SLC12A transporter family
 IPR018491  SLC12A transporter, C-terminal
 IPR030364  K/Cl co-transporter 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis NAS
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006813 potassium ion transport IEA
 biological_processGO:0007268 chemical synaptic transmission IBA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0071477 cellular hypotonic salinity response IEA
 biological_processGO:0071805 potassium ion transmembrane transport IEA
 biological_processGO:1902476 chloride transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane ISS
 molecular_functionGO:0005215 transporter activity IEA
 molecular_functionGO:0015293 symporter activity IEA
 molecular_functionGO:0015377 cation:chloride symporter activity IEA
 molecular_functionGO:0015379 potassium:chloride symporter activity IEA


Pathways (from Reactome)
Pathway description
Cation-coupled Chloride cotransporters
Defective SLC12A6 causes agenesis of the corpus callosum, with peripheral neuropathy (ACCPN)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000262 Turricephaly "Turricephaly is derived from the Latin word turris, meaning tall, and refers to a round, tall (tower-like) skull." [HPO:curators]
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 HP:0000276 Long face 
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 HP:0000294 Low frontal hairline "A condition in which the scalp hair is present at lower than usual areas of the forehead." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000324 Facial asymmetry 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000545 Myopia 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000763 Sensory neuropathy "Peripheral neuropathy affecting primarily the sensory nerves." [HPO:curators]
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 HP:0001182 Tapered fingers 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001271 Polyneuropathy "A generalized disorder of peripheral nerves." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001284 Areflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001349 Facial diplegia "Facial diplegia refers to simultaneous facial palsy (bilateral facial palsy is much rarer than unilateral facial palsy)." [HPO:curators]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0002111 Restrictive respiratory insufficiency 
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 HP:0002119 Ventriculomegaly 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002410 Aqueductal stenosis "Stenosis of the cerebral aqueduct (also known as the mesencephalic duct, aqueductus mesencephali, or aqueduct of Sylvius), which connects the third cerebral ventricle in the diencephalon to the fourth ventricle, which is between the pons and cerebellum." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002922 Increased CSF protein 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003378 Axonal degeneration/regeneration on nerve biopsy 
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 HP:0003383 Onion bulb formations on nerve biopsy 
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003444 EMG shows chronic denervation 
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 HP:0003448 Decreased sensory nerve conduction velocities (NCV) 
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 HP:0003477 Axonal neuropathy 
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 HP:0003676 Progressive disorder 
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 HP:0003690 Limb muscle weakness "Weakness of the muscles of the arms and legs." [HPO:curators]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0007178 Motor polyneuropathy 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0011947 Respiratory tract infection "An infection of the upper or lower respiratory tract." [HPO:probinson]
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 HP:0200085 Limb tremor 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr