ENSG00000074803


Homo sapiens

Features
Gene ID: ENSG00000074803
  
Biological name :SLC12A1
  
Synonyms : Q13621 / SLC12A1 / solute carrier family 12 member 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q21.1
Gene start: 48178438
Gene end: 48304078
  
Corresponding Affymetrix probe sets: 1554842_at (Human Genome U133 Plus 2.0 Array)   220281_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495332
Ensembl peptide - ENSP00000495813
Ensembl peptide - ENSP00000331550
Ensembl peptide - ENSP00000370381
Ensembl peptide - ENSP00000379822
Ensembl peptide - ENSP00000453230
Ensembl peptide - ENSP00000453409
Ensembl peptide - ENSP00000453602
Ensembl peptide - ENSP00000454178
Ensembl peptide - ENSP00000493875
NCBI entrez gene - 6557     See in Manteia.
OMIM - 600839
RefSeq - NM_000338
RefSeq - XM_005254606
RefSeq - NM_001184832
RefSeq Peptide - NP_000329
RefSeq Peptide - NP_001171761
swissprot - H0YLJ2
swissprot - H0YMG9
swissprot - Q13621
swissprot - Q8IUN5
swissprot - H0YNW0
Ensembl - ENSG00000074803
  
Related genetic diseases (OMIM): 601678 - Bartter syndrome, type 1, 601678
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc12a1ENSDARG00000098096Danio rerio
 SLC12A1ENSGALG00000004945Gallus gallus
 Slc12a1ENSMUSG00000027202Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P55011 / SLC12A2 / solute carrier family 12 member 2ENSG0000006465164
P55017 / SLC12A3 / solute carrier family 12 member 3ENSG0000007091548
Q9H2X9 / SLC12A5 / solute carrier family 12 member 5ENSG0000012414025
Q9Y666 / SLC12A7 / solute carrier family 12 member 7ENSG0000011350425
Q9UHW9 / SLC12A6 / solute carrier family 12 member 6ENSG0000014019925
Q9UP95 / SLC12A4 / solute carrier family 12 member 4ENSG0000012406725
Q9BXP2 / SLC12A9 / solute carrier family 12 member 9ENSG0000014682822
A0AV02 / SLC12A8 / solute carrier family 12 member 8ENSG0000022195516


Protein motifs (from Interpro)
Interpro ID Name
 IPR002443  Na/K/Cl co-transporter
 IPR002445  Solute carrier family 12 member 1
 IPR004841  Amino acid permease/ SLC12A domain
 IPR004842  SLC12A transporter family
 IPR013612  Amino acid permease, N-terminal
 IPR018491  SLC12A transporter, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport TAS
 biological_processGO:0006813 potassium ion transport IEA
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0034220 ion transmembrane transport ISS
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0071805 potassium ion transmembrane transport IEA
 biological_processGO:1902476 chloride transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IBA
 cellular_componentGO:0070062 extracellular exosome IDA
 molecular_functionGO:0005215 transporter activity IEA
 molecular_functionGO:0008511 sodium:potassium:chloride symporter activity TAS
 molecular_functionGO:0015293 symporter activity IEA
 molecular_functionGO:0015377 cation:chloride symporter activity IEA


Pathways (from Reactome)
Pathway description
Cation-coupled Chloride cotransporters
Defective SLC12A1 causes Bartter syndrome 1 (BS1)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000103 Polyuria 
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 HP:0000111 Renal juxtaglomerular cell hypertrophy/hyperplasia 
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 HP:0000121 Nephrocalcinosis 
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 HP:0000127 Renal salt wasting 
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 HP:0000128 Renal potassium wasting 
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 HP:0000841 Hyperactive renin-angiotensin system 
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 HP:0000843 Hyperparathyroidism 
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 HP:0000848 Increased plasma renin 
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 HP:0000859 Increased plasma aldosterone 
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 HP:0000934 Chondrocalcinosis 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001281 Tetany 
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 HP:0001425 Heterogeneous 
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 HP:0001508 Failure to thrive 
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 HP:0001518 Low birth weight 
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 HP:0001561 Polyhydramnios 
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 HP:0001563 Fetal polyuria 
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 HP:0001622 Premature birth 
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 HP:0001944 Dehydration 
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 HP:0001945 Fever 
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 HP:0001960 Hypokalemic metabolic alkalosis 
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 HP:0002013 Vomiting 
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 HP:0002014 Diarrhea 
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 HP:0002019 Constipation 
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 HP:0002150 Hypercalciuria 
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 HP:0002632 Low-to-normal blood pressure 
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 HP:0002900 Hypokalemia 
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 HP:0002914 Increased urinary chloride 
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 HP:0002917 Hypomagnesemia 
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 HP:0003072 Hypercalcemia "A level of blood calcium that is higher than normal." [HPO:curators]
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 HP:0003081 Increased urinary potassium 
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 HP:0003113 Hypochloremia 
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 HP:0003158 Hyposthenuria 
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003394 Muscle cramps 
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 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
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 HP:0003527 Hyperprostaglandinuria 
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 HP:0003566 Increased serum prostaglandin E 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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