ENSG00000141837


Homo sapiens

Features
Gene ID: ENSG00000141837
  
Biological name :CACNA1A
  
Synonyms : CACNA1A / calcium voltage-gated channel subunit alpha1 A / O00555
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: p13.13
Gene start: 13206442
Gene end: 13633025
  
Corresponding Affymetrix probe sets: 1558944_at (Human Genome U133 Plus 2.0 Array)   1558945_s_at (Human Genome U133 Plus 2.0 Array)   206399_x_at (Human Genome U133 Plus 2.0 Array)   210770_s_at (Human Genome U133 Plus 2.0 Array)   214933_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000490223
Ensembl peptide - ENSP00000490323
Ensembl peptide - ENSP00000490475
Ensembl peptide - ENSP00000490578
Ensembl peptide - ENSP00000490617
Ensembl peptide - ENSP00000490686
Ensembl peptide - ENSP00000489692
Ensembl peptide - ENSP00000489715
Ensembl peptide - ENSP00000489777
Ensembl peptide - ENSP00000489778
Ensembl peptide - ENSP00000489829
Ensembl peptide - ENSP00000489861
Ensembl peptide - ENSP00000489913
Ensembl peptide - ENSP00000489992
Ensembl peptide - ENSP00000490001
Ensembl peptide - ENSP00000490075
Ensembl peptide - ENSP00000490173
Ensembl peptide - ENSP00000490190
Ensembl peptide - ENSP00000353362
Ensembl peptide - ENSP00000459963
Ensembl peptide - ENSP00000460092
Ensembl peptide - ENSP00000460276
Ensembl peptide - ENSP00000464729
Ensembl peptide - ENSP00000465598
Ensembl peptide - ENSP00000467729
Ensembl peptide - ENSP00000479983
NCBI entrez gene - 773     See in Manteia.
OMIM - 601011
RefSeq - NM_001127221
RefSeq - NM_000068
RefSeq - NM_001127222
RefSeq - NM_001174080
RefSeq - NM_023035
RefSeq Peptide - NP_001120693
RefSeq Peptide - NP_075461
RefSeq Peptide - NP_001167551
RefSeq Peptide - NP_000059
RefSeq Peptide - NP_001120694
swissprot - O00555
swissprot - A0A087WW63
swissprot - A0A1B0GTG6
swissprot - A0A1B0GTI4
swissprot - A0A1B0GTN7
swissprot - A0A1B0GTW2
swissprot - A0A1B0GU74
swissprot - A0A1B0GU81
swissprot - A0A1B0GUE5
swissprot - A0A1B0GUM7
swissprot - A0A1B0GUP3
swissprot - A0A1B0GUS3
swissprot - A0A1B0GVD8
swissprot - A0A1B0GVQ9
swissprot - A0A1B0GVX1
swissprot - A0A1C7CYY9
swissprot - B5TYJ1
swissprot - I3L2V5
swissprot - I3L391
swissprot - K7EIF8
swissprot - K7EKF7
swissprot - K7EQ95
Ensembl - ENSG00000141837
  
Related genetic diseases (OMIM): 108500 - Episodic ataxia, type 2, 108500
  141500 - Migraine, familial hemiplegic, 1, 141500
  183086 - Spinocerebellar ataxia 6, 183086
  617106 - Epileptic encephalopathy, early infantile, 42, 617106
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cacna1aaENSDARG00000037905Danio rerio
 cacna1abENSDARG00000006923Danio rerio
 P97445ENSMUSG00000034656Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q00975 / CACNA1B / calcium voltage-gated channel subunit alpha1 BENSG0000014840860
Q15878 / CACNA1E / calcium voltage-gated channel subunit alpha1 EENSG0000019821655
Q13936 / CACNA1C / calcium voltage-gated channel subunit alpha1 CENSG0000015106734
Q01668 / CACNA1D / calcium voltage-gated channel subunit alpha1 DENSG0000015738834
Q13698 / CACNA1S / calcium voltage-gated channel subunit alpha1 SENSG0000008124831
O60840 / CACNA1F / calcium voltage-gated channel subunit alpha1 FENSG0000010200131
NALCN / Q8IZF0 / sodium leak channel, non-selectiveENSG0000010245215
Q8NEC5 / CATSPER1 / cation channel sperm associated 1ENSG000001752947


Protein motifs (from Interpro)
Interpro ID Name
 IPR002077  Voltage-dependent calcium channel, alpha-1 subunit
 IPR005447  Voltage-dependent calcium channel, N-type, alpha-1 subunit
 IPR005448  Voltage-dependent calcium channel, P/Q-type, alpha-1 A
 IPR005821  Ion transport domain
 IPR014873  Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
 IPR031649  Voltage-dependent L-type calcium channel, IQ-associated domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001505 regulation of neurotransmitter levels IEA
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006816 calcium ion transport IEA
 biological_processGO:0007204 positive regulation of cytosolic calcium ion concentration ISS
 biological_processGO:0007214 gamma-aminobutyric acid signaling pathway IEA
 biological_processGO:0007268 chemical synaptic transmission IEA
 biological_processGO:0007270 neuron-neuron synaptic transmission IEA
 biological_processGO:0007274 neuromuscular synaptic transmission IEA
 biological_processGO:0007416 synapse assembly IEA
 biological_processGO:0007628 adult walking behavior IEA
 biological_processGO:0008219 cell death IDA
 biological_processGO:0010817 regulation of hormone levels IEA
 biological_processGO:0014051 gamma-aminobutyric acid secretion IEA
 biological_processGO:0014056 regulation of acetylcholine secretion, neurotransmission IEA
 biological_processGO:0017156 calcium ion regulated exocytosis IEA
 biological_processGO:0017158 regulation of calcium ion-dependent exocytosis IEA
 biological_processGO:0019226 transmission of nerve impulse IEA
 biological_processGO:0021522 spinal cord motor neuron differentiation IEA
 biological_processGO:0021590 cerebellum maturation IEA
 biological_processGO:0021679 cerebellar molecular layer development IEA
 biological_processGO:0021680 cerebellar Purkinje cell layer development IEA
 biological_processGO:0021702 cerebellar Purkinje cell differentiation IEA
 biological_processGO:0021750 vestibular nucleus development IEA
 biological_processGO:0021953 central nervous system neuron differentiation IEA
 biological_processGO:0030644 cellular chloride ion homeostasis IEA
 biological_processGO:0031335 regulation of sulfur amino acid metabolic process IEA
 biological_processGO:0032353 negative regulation of hormone biosynthetic process IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0035249 synaptic transmission, glutamatergic IEA
 biological_processGO:0042391 regulation of membrane potential IEA
 biological_processGO:0042593 glucose homeostasis IEA
 biological_processGO:0043113 receptor clustering IEA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0048265 response to pain IEA
 biological_processGO:0048266 behavioral response to pain IEA
 biological_processGO:0048791 calcium ion-regulated exocytosis of neurotransmitter IEA
 biological_processGO:0048813 dendrite morphogenesis IEA
 biological_processGO:0050770 regulation of axonogenesis IEA
 biological_processGO:0050796 regulation of insulin secretion TAS
 biological_processGO:0050877 nervous system process IEA
 biological_processGO:0050883 musculoskeletal movement, spinal reflex action IEA
 biological_processGO:0050885 neuromuscular process controlling balance IEA
 biological_processGO:0050905 neuromuscular process IEA
 biological_processGO:0051899 membrane depolarization TAS
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060024 rhythmic synaptic transmission IEA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 biological_processGO:0086010 membrane depolarization during action potential IBA
 biological_processGO:1904645 response to amyloid-beta IDA
 biological_processGO:1904646 cellular response to amyloid-beta IGI
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005891 voltage-gated calcium channel complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0042995 cell projection IDA
 cellular_componentGO:0043025 neuronal cell body ISS
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005245 voltage-gated calcium channel activity IEA
 molecular_functionGO:0005262 calcium channel activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008331 high voltage-gated calcium channel activity IDA
 molecular_functionGO:0019905 syntaxin binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Presynaptic depolarization and calcium channel opening
Regulation of insulin secretion


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000360 Tinnitus "Tinnitus is an auditory perception that can be described as the experience of sound, in the ear or in the head, in the absence of external acoustic stimulation." [Cochrane:ab005233]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000473 Torticollis 
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 HP:0000565 Esotropia 
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000640 Gaze-evoked nystagmus "Nystagmus made apparent by looking to the right or to the left." [HPO:curators]
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 HP:0000643 Blepharospasm "An involuntary recurrent spasm of both eyelids." [HPO:curators]
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 HP:0000651 Diplopia "Diplopia is a condition in which a single object is perceived as two images, it is also known as double vision." [HPO:curators]
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000713 Agitation 
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 HP:0000737 Irritability 
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 HP:0000739 Anxiety 
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 HP:0000741 Apathy 
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 HP:0000763 Sensory neuropathy "Peripheral neuropathy affecting primarily the sensory nerves." [HPO:curators]
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 HP:0000980 Pallor 
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 HP:0001125 Hemianopic blurring of vision 
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 HP:0001152 Saccadic smooth pursuit 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001259 Coma 
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001269 Hemiparesis "Relatively mild weakness in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001276 Hypertonia 
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 HP:0001289 Confusion "Lack of clarity and coherence of thought, perception, understanding, or action." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001425 Heterogeneous 
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 HP:0001751 Vestibular dysfunction 
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 HP:0001945 Fever 
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 HP:0002013 Vomiting 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002017 Nausea and vomiting 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002073 Progressive cerebellar ataxia 
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 HP:0002076 Migraine 
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 HP:0002077 Migraine with aura 
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 HP:0002080 Intention tremor "An oscillatory cerebellar ataxia that tends to be absent when the limbs are inactive and during the first part of voluntary movement but worsening as the movement continues and greater precision is required (e.g., in touching a target such as the patient s nose or a physician s finger)." [HPO:curators]
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 HP:0002131 Ataxia, episodic 
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 HP:0002172 Postural instability 
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 HP:0002301 Hemiplegia "Paralysis (complete loss of muscle function) in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0002305 Athetosis "Athetosis (from the Greek word for changeable or unfixed ) refers to an inability to sustain the muscles of the fingers, toes, tongue, or any other group of muscles in a fixed position. Instead, posture is interrupted by slow, purposeless involuntary movements." [HPO:curators]
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 HP:0002311 Incoordination 
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 HP:0002317 Unsteady gait 
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0002329 Drowsiness 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002357 Dysphasia 
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 HP:0002367 Visual hallucinations 
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 HP:0002442 Dyscalculia 
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 HP:0002457 Abnormal head movements 
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 HP:0002486 Myotonia "Myotonia is characterized by an abnormally slow relaxation of the muscles after voluntary contraction or electrical stimulation. During physical examination, myotonia may be elicited by asking the patient to make a tight fist and then quickly open the hand." [HPO:curators]
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 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003676 Progressive disorder 
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 HP:0003743 Genetic anticipation 
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 HP:0003829 Incomplete penetrance 
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0006855 Cerebellar vermis atrophy 
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 HP:0007670 Abnormal vestibuloocular reflex 
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 HP:0007772 Impaired smooth pursuit in adult patients 
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 HP:0007979 Gaze-evoked horizontal nystagmus "Horizontal nystagmus made apparent by looking to the right or to the left." [HPO:curators]
Show

 HP:0008765 Auditory hallucinations 
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 HP:0010544 Vertical nystagmus "Vertical nystagmus may present with either up-beating or down-beating eye movements or both. When present in the straight-ahead position of gaze it is referred to as upbeat nystagmus or downbeat nystagmus." [HPO:curators]
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 HP:0010545 Downbeat nystagmus "A type of vertical nystagmus that is present in the straight-ahead position of gaze." [HPO:curators]
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 HP:0030511 Bradyopsia "Difficulty in seeing moving objects." [pmid:25770143]
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 HP:0030842 Choking episodes "Incidents in which a piece of food or other objects get stuck in the upper airway and provoke coughing, gagging, inability to talk, and difficulty breathing." [HPO:probinson]
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 HP:0100022 Abnormality of movement "An abnormality of movement with a neurological basis characterized by changes in coordination and speed of voluntary movements." [HPO:probinson]
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000166862 CACNG2 / Q9Y698 / calcium voltage-gated channel auxiliary subunit gamma 2  / complex
 ENSG00000182389 CACNB4 / O00305 / calcium voltage-gated channel auxiliary subunit beta 4  / complex
 ENSG00000007402 Q9NY47 / CACNA2D2 / calcium voltage-gated channel auxiliary subunit alpha2delta 2  / complex






 

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