ENSG00000157388


Homo sapiens

Features
Gene ID: ENSG00000157388
  
Biological name :CACNA1D
  
Synonyms : CACNA1D / calcium voltage-gated channel subunit alpha1 D / Q01668
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p21.1
Gene start: 53328963
Gene end: 53813733
  
Corresponding Affymetrix probe sets: 1555993_at (Human Genome U133 Plus 2.0 Array)   207998_s_at (Human Genome U133 Plus 2.0 Array)   210108_at (Human Genome U133 Plus 2.0 Array)   243334_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000489769
Ensembl peptide - ENSP00000418045
Ensembl peptide - ENSP00000489790
Ensembl peptide - ENSP00000494413
Ensembl peptide - ENSP00000491921
Ensembl peptide - ENSP00000490908
Ensembl peptide - ENSP00000490889
Ensembl peptide - ENSP00000490839
Ensembl peptide - ENSP00000490523
Ensembl peptide - ENSP00000490183
Ensembl peptide - ENSP00000490108
Ensembl peptide - ENSP00000490039
Ensembl peptide - ENSP00000489962
Ensembl peptide - ENSP00000288133
Ensembl peptide - ENSP00000288139
Ensembl peptide - ENSP00000409174
Ensembl peptide - ENSP00000418014
NCBI entrez gene - 776     See in Manteia.
OMIM - 114206
RefSeq - XM_017007145
RefSeq - NM_000720
RefSeq - NM_001128839
RefSeq - NM_001128840
RefSeq - XM_005265448
RefSeq - XM_011534094
RefSeq - XM_011534096
RefSeq - XM_011534097
RefSeq - XM_011534099
RefSeq - XM_011534100
RefSeq - XM_017007137
RefSeq - XM_017007138
RefSeq - XM_017007139
RefSeq - XM_017007140
RefSeq - XM_017007141
RefSeq - XM_017007142
RefSeq - XM_017007143
RefSeq - XM_017007144
RefSeq Peptide - NP_000711
RefSeq Peptide - NP_001122311
RefSeq Peptide - NP_001122312
swissprot - A0A1B0GW98
swissprot - A0A1B0GVI2
swissprot - A0A1B0GUN6
swissprot - A0A1B0GUH2
swissprot - A0A1B0GUB6
swissprot - A0A1W2PQ56
swissprot - A0A1B0GTP8
swissprot - H7C4S8
swissprot - Q01668
swissprot - Q59GD8
swissprot - A0A1B0GTN0
swissprot - A0A1B0GU49
swissprot - A0A1B0GWF7
swissprot - A0A1B0GWE1
Ensembl - ENSG00000157388
  
Related genetic diseases (OMIM): 614896 - Sinoatrial node dysfunction and deafness, 614896
  615474 - Primary aldosteronism, seizures, and neurologic abnormalities, 615474
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cacna1daENSDARG00000102773Danio rerio
 cacna1dbENSDARG00000115603Danio rerio
 cacna1dbENSDARG00000110642Danio rerio
 O73700ENSGALG00000005332Gallus gallus
 Q99246ENSMUSG00000015968Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q13936 / CACNA1C / calcium voltage-gated channel subunit alpha1 CENSG0000015106767
O60840 / CACNA1F / calcium voltage-gated channel subunit alpha1 FENSG0000010200160
Q13698 / CACNA1S / calcium voltage-gated channel subunit alpha1 SENSG0000008124855
O00555 / CACNA1A / calcium voltage-gated channel subunit alpha1 AENSG0000014183739
Q00975 / CACNA1B / calcium voltage-gated channel subunit alpha1 BENSG0000014840838
Q15878 / CACNA1E / calcium voltage-gated channel subunit alpha1 EENSG0000019821636
NALCN / Q8IZF0 / sodium leak channel, non-selectiveENSG0000010245217
Q8NEC5 / CATSPER1 / cation channel sperm associated 1ENSG000001752947


Protein motifs (from Interpro)
Interpro ID Name
 IPR002077  Voltage-dependent calcium channel, alpha-1 subunit
 IPR005446  Voltage-dependent calcium channel, L-type, alpha-1 subunit
 IPR005452  Voltage-dependent calcium channel, L-type, alpha-1D subunit
 IPR005821  Ion transport domain
 IPR014873  Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
 IPR031649  Voltage-dependent L-type calcium channel, IQ-associated domain
 IPR031688  Voltage-gated calcium channel subunit alpha, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006816 calcium ion transport IEA
 biological_processGO:0007188 adenylate cyclase-modulating G-protein coupled receptor signaling pathway ISS
 biological_processGO:0007605 sensory perception of sound IMP
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0050796 regulation of insulin secretion TAS
 biological_processGO:0051928 positive regulation of calcium ion transport IDA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060372 regulation of atrial cardiac muscle cell membrane repolarization ISS
 biological_processGO:0061337 cardiac conduction TAS
 biological_processGO:0070509 calcium ion import IDA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 biological_processGO:0086002 cardiac muscle cell action potential involved in contraction IMP
 biological_processGO:0086012 membrane depolarization during cardiac muscle cell action potential IC
 biological_processGO:0086046 membrane depolarization during SA node cell action potential IMP
 biological_processGO:0086091 regulation of heart rate by cardiac conduction IMP
 biological_processGO:1901016 regulation of potassium ion transmembrane transporter activity ISS
 biological_processGO:1901379 regulation of potassium ion transmembrane transport ISS
 cellular_componentGO:0005886 plasma membrane ISS
 cellular_componentGO:0005891 voltage-gated calcium channel complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030018 Z disc ISS
 cellular_componentGO:1990454 L-type voltage-gated calcium channel complex IDA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005245 voltage-gated calcium channel activity IEA
 molecular_functionGO:0005262 calcium channel activity IEA
 molecular_functionGO:0008331 high voltage-gated calcium channel activity IDA
 molecular_functionGO:0030506 ankyrin binding ISS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051393 alpha-actinin binding IPI
 molecular_functionGO:0086007 voltage-gated calcium channel activity involved in cardiac muscle cell action potential IC
 molecular_functionGO:0086059 voltage-gated calcium channel activity involved SA node cell action potential IMP


Pathways (from Reactome)
Pathway description
Adrenaline,noradrenaline inhibits insulin secretion
NCAM1 interactions
Regulation of insulin secretion
Phase 0 - rapid depolarisation
Phase 2 - plateau phase


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000360 Tinnitus "Tinnitus is an auditory perception that can be described as the experience of sound, in the ear or in the head, in the absence of external acoustic stimulation." [Cochrane:ab005233]
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 HP:0000365 Hearing loss 
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 HP:0000421 Epistaxis 
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 HP:0000787 Kidney stones 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000859 Increased plasma aldosterone 
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 HP:0001258 Spastic paraplegia 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001655 Patent foramen ovale 
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 HP:0001662 Bradycardia 
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 HP:0001712 Left ventricular hypertrophy 
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 HP:0001714 Ventricular hypertrophy 
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 HP:0001959 Polydipsia 
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 HP:0002018 Nausea 
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002092 Pulmonary hypertension 
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 HP:0002170 Intracranial hemorrhage "A hemorrhage (bleeding) occuring within the skull." [HPO:curators]
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 HP:0002305 Athetosis "Athetosis (from the Greek word for changeable or unfixed ) refers to an inability to sustain the muscles of the fingers, toes, tongue, or any other group of muscles in a fixed position. Instead, posture is interrupted by slow, purposeless involuntary movements." [HPO:curators]
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 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
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 HP:0002384 Complex partial seizures "A `partial seizure` (HP:0007359) characterized by impairment or loss of consciousness." [HPO:curators]
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002900 Hypokalemia 
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 HP:0003351 Decreased renin 
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 HP:0008221 Enlarged adrenal glands 
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011166 Focal myoclonic seizures 
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 HP:0011410 Caesarian section 
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 HP:0011706 Second degree atrioventricular block "An intermittent atrioventricular block with failure of some atrial impulses to conduct to the ventricles, i.e., some but not all atrial impulses are conducted through the atrioventricular node and trigger ventricular contraction." [DDD:dbrown, HPO:probinson]
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 HP:0040084 Abnormal circulating renin 
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 HP:0100021 Cerebral paralysis "Cerebral palsy describes a group of permanent disorders of the development of movement and posture, causing activity limitation, that are attributed to nonprogressive disturbances that occurred in the developing fetal or infant brain. The motor disorders of cerebral palsy are often accompanied by disturbances of sensation, perception, cognition, communication, and behaviour, by epilepsy, and by secondary musculoskeletal problems." [HPO:sdoelken]
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 HP:0100285 EMG: impaired neuromuscular transmission 
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 HP:0100704 Cortical visual impairment "A form of loss of vision caused by damage to the visual cortex rather than a defect in the eye." [HPO:probinson]
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 HP:0200114 Metabolic alkalosis 
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 HP:0200128 Biventricular hypertrophy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000007402 Q9NY47 / CACNA2D2 / calcium voltage-gated channel auxiliary subunit alpha2delta 2  / complex
 ENSG00000151062 Q7Z3S7 / CACNA2D4 / calcium voltage-gated channel auxiliary subunit alpha2delta 4  / complex
 ENSG00000157388 Q01668 / CACNA1D / calcium voltage-gated channel subunit alpha1 D  / complex
 ENSG00000165995 CACNB2 / Q08289 / calcium voltage-gated channel auxiliary subunit beta 2  / complex
 ENSG00000182389 CACNB4 / O00305 / calcium voltage-gated channel auxiliary subunit beta 4  / complex
 ENSG00000167535 CACNB3 / P54284 / calcium voltage-gated channel auxiliary subunit beta 3  / complex
 ENSG00000067191 CACNB1 / Q02641 / calcium voltage-gated channel auxiliary subunit beta 1  / complex
 ENSG00000157445 Q8IZS8 / CACNA2D3 / calcium voltage-gated channel auxiliary subunit alpha2delta 3  / complex
 ENSG00000153956 P54289 / CACNA2D1 / calcium voltage-gated channel auxiliary subunit alpha2delta 1  / complex






 

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