ENSG00000147133


Homo sapiens

Features
Gene ID: ENSG00000147133
  
Biological name :TAF1
  
Synonyms : P21675 / TAF1 / TATA-box binding protein associated factor 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q13.1
Gene start: 71366239
Gene end: 71532374
  
Corresponding Affymetrix probe sets: 216711_s_at (Human Genome U133 Plus 2.0 Array)   216955_at (Human Genome U133 Plus 2.0 Array)   227205_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000424526
Ensembl peptide - ENSP00000406549
Ensembl peptide - ENSP00000421611
Ensembl peptide - ENSP00000276072
Ensembl peptide - ENSP00000362880
Ensembl peptide - ENSP00000362895
Ensembl peptide - ENSP00000406517
NCBI entrez gene - 6872     See in Manteia.
OMIM - 313650
RefSeq - XM_006724682
RefSeq - NM_001286074
RefSeq - NM_004606
RefSeq - NM_138923
RefSeq - XM_005262295
RefSeq - XM_005262296
RefSeq - XM_005262297
RefSeq Peptide - NP_620278
RefSeq Peptide - NP_004597
RefSeq Peptide - NP_001273003
swissprot - H7C2K9
swissprot - P21675
swissprot - H0Y8N6
swissprot - H0Y9L7
swissprot - H7BY98
Ensembl - ENSG00000147133
  
Related genetic diseases (OMIM): 300966 - Mental retardation, X-linked, syndromic 33, 300966
  314250 - Dystonia-Parkinsonism, X-linked, 314250

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf1ENSDARG00000035330Danio rerio
 ENSGALG00000005464Gallus gallus
 Taf1ENSMUSG00000031314Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TAF1L / Q8IZX4 / TATA-box binding protein associated factor 1 likeENSG0000012272889
Q9ULU4 / ZMYND8 / zinc finger MYND-type containing 8ENSG0000010104011
Q15326 / ZMYND11 / zinc finger MYND-type containing 11ENSG000000151715


Protein motifs (from Interpro)
Interpro ID Name
 IPR001487  Bromodomain
 IPR009067  TAFII-230 TBP-binding
 IPR011177  Transcription initiation factor TFIID subunit 1, animal
 IPR018359  Bromodomain, conserved site
 IPR022591  Transcription initiation factor TFIID subunit 1, domain of unknown function
 IPR036427  Bromodomain-like superfamily
 IPR036741  TAFII-230 TBP-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006352 DNA-templated transcription, initiation ISS
 biological_processGO:0006355 regulation of transcription, DNA-templated TAS
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter TAS
 biological_processGO:0006468 protein phosphorylation IDA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IDA
 biological_processGO:0006974 cellular response to DNA damage stimulus IDA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0010629 negative regulation of gene expression IMP
 biological_processGO:0010768 negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage IMP
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0016573 histone acetylation IEA
 biological_processGO:0018105 peptidyl-serine phosphorylation IDA
 biological_processGO:0018107 peptidyl-threonine phosphorylation IDA
 biological_processGO:0030901 midbrain development IGI
 biological_processGO:0032092 positive regulation of protein binding IDA
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IDA
 biological_processGO:0034644 cellular response to UV IDA
 biological_processGO:0036369 transcription factor catabolic process IDA
 biological_processGO:0043433 negative regulation of DNA-binding transcription factor activity IC
 biological_processGO:0045943 positive regulation of transcription by RNA polymerase I IGI
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IGI
 biological_processGO:0046777 protein autophosphorylation IDA
 biological_processGO:0050821 protein stabilization IDA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly ISS
 biological_processGO:0060260 regulation of transcription initiation from RNA polymerase II promoter NAS
 biological_processGO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter ISS
 biological_processGO:0071318 cellular response to ATP IDA
 biological_processGO:1901796 regulation of signal transduction by p53 class mediator TAS
 biological_processGO:1902806 regulation of cell cycle G1/S phase transition TAS
 biological_processGO:1903026 negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding IDA
 biological_processGO:1905524 negative regulation of protein autoubiquitination IDA
 biological_processGO:2000059 negative regulation of ubiquitin-dependent protein catabolic process IMP
 biological_processGO:2000825 positive regulation of androgen receptor activity IDA
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005667 transcription factor complex IPI
 cellular_componentGO:0005669 transcription factor TFIID complex TAS
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0071339 MLL1 complex IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IGI
 molecular_functionGO:0001075 transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly IBA
 molecular_functionGO:0001129 RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly IBA
 molecular_functionGO:0002039 p53 binding IPI
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003713 transcription coactivator activity IDA
 molecular_functionGO:0004402 histone acetyltransferase activity IDA
 molecular_functionGO:0004674 protein serine/threonine kinase activity EXP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0016301 kinase activity IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016746 transferase activity, transferring acyl groups IEA
 molecular_functionGO:0017025 TBP-class protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding ISS
 molecular_functionGO:0044212 transcription regulatory region DNA binding ISS
 molecular_functionGO:0046982 protein heterodimerization activity IPI
 molecular_functionGO:0061628 H3K27me3 modified histone binding IPI
 molecular_functionGO:0061629 RNA polymerase II sequence-specific DNA-binding transcription factor binding IPI
 molecular_functionGO:0061631 ubiquitin conjugating enzyme activity IDA
 molecular_functionGO:0070577 lysine-acetylated histone binding IDA


Pathways (from Reactome)
Pathway description
HIV Transcription Initiation
RNA Polymerase II HIV Promoter Escape
Transcription of the HIV genome
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000219 Thin upper lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000276 Long face 
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 HP:0000307 Pointed chin 
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 HP:0000308 Microretrognathia 
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 HP:0000316 Hypertelorism 
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 HP:0000336 Prominent supraorbital ridges "Abnormal prominence of the supraorbital ridges, which are bony ridge located above the eye sockets in the area of the eyebrows." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000389 Chronic otitis media 
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 HP:0000391 Thickened helices 
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 HP:0000400 Large ears 
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 HP:0000411 Protruding ears 
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 HP:0000414 Bulbous nose 
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 HP:0000437 Flat nasal tip 
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 HP:0000455 Broad nasal tip 
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 HP:0000470 Short neck 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000496 Abnormality of eye movement "An abnormality in voluntary or involuntary eye movements or their control." [HPO:probinson]
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 HP:0000520 Proptosis 
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 HP:0000545 Myopia 
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 HP:0000579 Nasolacrimal duct obstruction 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000643 Blepharospasm "An involuntary recurrent spasm of both eyelids." [HPO:curators]
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000729 Pervasive developmental disorder 
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 HP:0000739 Anxiety 
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 HP:0000750 Impaired language development 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000960 Sacral dimple "A subtype of `skin dimples` (HP:0010781) presenting as an indentation in the skin of the intergluteal cleft ." [HPO:probinson]
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001057 Aplasia cutis congenita "A developmental defect resulting in the congenital absence of skin in multiple or solitary non-inflammatory, well-demarcated, oval or circular ulcers with a diameter of about 1 to 2 cm. Aplasia cutis congenita most commonly occurs on the scalp, but may present in the face, trunk, or limbs." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001264 Spastic diplegia "Spasticity (neuromuscular hypertonia) primarily in the muscles of the legs, hips, and pelvis." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001304 Torsion dystonia 
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 HP:0001315 Reduced reflexes 
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 HP:0001320 Cerebellar vermis hypoplasia 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001385 Hip dysplasia 
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0002019 Constipation 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
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 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002141 Gait imbalance 
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 HP:0002172 Postural instability 
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 HP:0002194 Delayed gross motor development 
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 HP:0002322 Resting tremor "A resting tremor occurs when muscles are at rest and becomes less noticeable or disappears when the affected muscles are moved. Resting tremors are often slow and coarse." [HPO:curators]
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 HP:0002355 Difficulty walking 
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 HP:0002359 Frequent falls 
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 HP:0002362 Shuffling gait 
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 HP:0002378 Hand tremor 
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 HP:0002451 Limb dystonia 
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 HP:0002548 Favorable response to levodopa 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0003577 Onset at birth 
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 HP:0003581 Onset in adulthood 
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 HP:0004696 talipes cavus equinovarus 
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 HP:0005469 Occipital plagiocephaly "Occipital plagiocephaly can result from fusion or sclerosis of the lambdoid suture. If unilateral, this is accompanied by unilateral occipital flattening and bulging of the ispilateral frontal bone." [HPO:curators]
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 HP:0006511 Laryngeal stridor 
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 HP:0006979 Sleep-wake cycle disturbance 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007158 Progressive extrapyramidal rigidity 
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 HP:0007375 Abnormality of the septum pellucidum "Abnormality of the septum pellucidum, which is a thin, triangular, vertical membrane separating the lateral ventricles of the brain." [HPO:curators]
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 HP:0008070 Sparse hair 
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 HP:0008472 Prominent protruding coccyx 
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 HP:0008897 Growth retardation, progressive 
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 HP:0009894 Thickened ears 
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 HP:0010808 Protruding tongue "Tongue extending beyond the alveolar ridges or teeth at rest." [pmid:19125428]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011410 Caesarian section 
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 HP:0011822 Broad chin "Increased width of the midpoint of the mandible (mental protuberance) and overlying soft tissue." [pmid:19125436]
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 HP:0011927 Short digit "One or more digit that appears disproportionately short compared to the hand/foot, whereby either the entire digit or a specific phalanx is shortened." [HPO:probinson]
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 HP:0011951 Aspiration pneumonia "Pneumonia due to the aspiration (breathing in) of food, liquid, or gastric contents into the upper respiratory tract." [HPO:probinson]
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 HP:0031162 Impaired oropharyngeal swallow response "Delay or absence of the swallow response, reflexes triggered by the contact the food bolus makes with the anterior faucial pillars." [PMID:27785002]
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 HP:0040016 Prominent coccyx 
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 HP:0100797 Toenail dysplasia "An abnormality of the development of the toenails." [HPO:probinson]
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 HP:0200136 Oral-pharyngeal dysphagia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000141510 TP53 / P04637 / tumor protein p53  / reaction






 

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