ENSGALG00000005464


Gallus gallus

Features
Gene ID: ENSGALG00000005464
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : P21675 / Q80UV9 / Q8IZX4 / TAF1 / TAF1L / TATA-box binding protein associated factor 1 / TATA-box binding protein associated factor 1 like
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 2232118
Gene end: 2260037
  
Corresponding Affymetrix probe sets: Gga.2857.1.S1_at (Chicken Array)   GgaAffx.26508.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008763
NCBI entrez gene - 422204     See in Manteia.
RefSeq - XM_015278401
swissprot - F1P5U7
Ensembl - ENSGALG00000005464
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf1ENSDARG00000035330Danio rerio
 TAF1ENSG00000147133Homo sapiens
 TAF1LENSG00000122728Homo sapiens
 Taf1ENSMUSG00000031314Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZMYND8 / zinc finger MYND-type containing 8 / Q9ULU4*ENSGALG000000045429
ZMYND11 / zinc finger MYND-type containing 11 / Q15326* / Q8R5C8* / zinc finger, MYND domain containing 11*ENSGALG000000065995


Protein motifs (from Interpro)
Interpro ID Name
 IPR001487  Bromodomain
 IPR009067  TAFII-230 TBP-binding
 IPR011177  Transcription initiation factor TFIID subunit 1, animal
 IPR018359  Bromodomain, conserved site
 IPR022591  Transcription initiation factor TFIID subunit 1, domain of unknown function


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0016573 histone acetylation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IBA
 molecular_functionGO:0001075 transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly IBA
 molecular_functionGO:0001129 RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004402 histone acetyltransferase activity IBA
 molecular_functionGO:0004674 protein serine/threonine kinase activity IEA
 molecular_functionGO:0017025 TBP-class protein binding IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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