ENSG00000172243


Homo sapiens

Features
Gene ID: ENSG00000172243
  
Biological name :CLEC7A
  
Synonyms : CLEC7A / C-type lectin domain containing 7A / Q9BXN2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: p13.2
Gene start: 10116777
Gene end: 10130258
  
Corresponding Affymetrix probe sets: 1554406_a_at (Human Genome U133 Plus 2.0 Array)   1555213_a_at (Human Genome U133 Plus 2.0 Array)   1555214_a_at (Human Genome U133 Plus 2.0 Array)   1555756_a_at (Human Genome U133 Plus 2.0 Array)   221698_s_at (Human Genome U133 Plus 2.0 Array)   241098_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000434392
Ensembl peptide - ENSP00000432876
Ensembl peptide - ENSP00000434954
Ensembl peptide - ENSP00000436923
Ensembl peptide - ENSP00000266456
Ensembl peptide - ENSP00000298523
Ensembl peptide - ENSP00000302569
Ensembl peptide - ENSP00000312089
Ensembl peptide - ENSP00000344723
Ensembl peptide - ENSP00000379743
Ensembl peptide - ENSP00000431461
NCBI entrez gene - 64581     See in Manteia.
OMIM - 606264
RefSeq - XM_017019823
RefSeq - NM_022570
RefSeq - NM_197947
RefSeq - NM_197948
RefSeq - NM_197949
RefSeq - NM_197950
RefSeq - NM_197954
RefSeq - XM_006719135
RefSeq - XM_017019822
RefSeq Peptide - NP_072092
RefSeq Peptide - NP_922939
RefSeq Peptide - NP_922940
RefSeq Peptide - NP_922941
RefSeq Peptide - NP_922945
RefSeq Peptide - NP_922938
swissprot - A0A0S2Z5Q1
swissprot - Q68D78
swissprot - Q9BXN2
swissprot - A0A024RAN9
Ensembl - ENSG00000172243
  
Related genetic diseases (OMIM): 613108 - Candidiasis, familial, 4, autosomal recessive, 613108
  614079 - {Aspergillosis, susceptibility to}, 614079
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Clec7aENSMUSG00000079293Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
OLR1 / P78380 / oxidized low density lipoprotein receptor 1ENSG0000017339132
Q2HXU8 / CLEC12B / C-type lectin domain family 12 member BENSG0000025666028
CLEC1B / Q9P126 / C-type lectin domain family 1 member BENSG0000016568225
Q5QGZ9 / CLEC12A / C-type lectin domain family 12 member AENSG0000017232225
CLEC9A / Q6UXN8 / C-type lectin domain containing 9AENSG0000019799224
CLEC1A / Q8NC01 / C-type lectin domain family 1 member AENSG0000015004824


Protein motifs (from Interpro)
Interpro ID Name
 IPR001304  C-type lectin-like
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR023352  Membrane associated eicosanoid/glutathione metabolism-like domain superfamily
 IPR033992  Natural killer cell receptor-like, C-type lectin-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002221 pattern recognition receptor signaling pathway IEA
 biological_processGO:0002223 stimulatory C-type lectin receptor signaling pathway TAS
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006910 phagocytosis, recognition IDA
 biological_processGO:0006954 inflammatory response IEA
 biological_processGO:0008037 cell recognition IDA
 biological_processGO:0009756 carbohydrate mediated signaling TAS
 biological_processGO:0042110 T cell activation TAS
 biological_processGO:0042832 defense response to protozoan NAS
 biological_processGO:0045087 innate immune response IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008329 signaling pattern recognition receptor activity IDA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0042287 MHC protein binding NAS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
CLEC7A (Dectin-1) signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000142 Abnormality of the vagina 
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
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 HP:0000988 Skin rash 
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001821 Broad nails 
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 HP:0002105 Hemoptysis "Coughing up (expectoration) of blood or blood-streaked sputum from the larynx, trachea, bronchi, or lungs." [HPO:curators]
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 HP:0002205 Recurrent respiratory infections 
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 HP:0004306 Abnormality of the endocardium "An abnormality of the `endocardium` (FMA:7280)." [HPO:probinson]
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 HP:0004370 Abnormality of temperature regulation 
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 HP:0008388 Abnormality of the toenails 
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 HP:0008872 Feeding problems in infancy 
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0012115 Hepatitis "Inflammation of the liver." [HPO:probinson]
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 HP:0012203 Onychomycosis "A fungal infection of the toenails or fingernails that tends to cause the nails to thicken, discolor, disfigure, and split." [HPO:probinson]
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 HP:0012204 Recurrent vulvovaginal candidiasis "Recurrent infection involving the vulva, vagina, and adjacent crural areas, whereby the causative agent belongs to the genus Candida." [HPO:probinson]
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 HP:0012735 Cough "A sudden, audible expulsion of air from the lungs through a partially closed glottis, preceded by inhalation." [HPO:probinson]
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 HP:0030016 Dyspareunia "Recurrent or persistent genital pain associated with sexual intercourse." []
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 HP:0100825 Cheilitis "Inflammation of the lip." [HPO:sdoelken]
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 HP:0200034 skin papules "A circumscribed, solid elevation of skin with no visible fluid, varying in size from a pinhead to less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000165025 SYK / P43405 / spleen associated tyrosine kinase  / reaction / complex
 ENSG00000197122 SRC / P12931 / SRC proto-oncogene, non-receptor tyrosine kinase  / reaction






 

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