ENSG00000186496


Homo sapiens

Features
Gene ID: ENSG00000186496
  
Biological name :ZNF396
  
Synonyms : Q96N95 / zinc finger protein 396 / ZNF396
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: -1
Band: q12.2
Gene start: 35366697
Gene end: 35377337
  
Corresponding Affymetrix probe sets: 1552825_at (Human Genome U133 Plus 2.0 Array)   1554231_a_at (Human Genome U133 Plus 2.0 Array)   1554985_at (Human Genome U133 Plus 2.0 Array)   1555166_a_at (Human Genome U133 Plus 2.0 Array)   1570030_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000465440
Ensembl peptide - ENSP00000467275
Ensembl peptide - ENSP00000468381
Ensembl peptide - ENSP00000302310
Ensembl peptide - ENSP00000466500
NCBI entrez gene - 252884     See in Manteia.
OMIM - 609600
RefSeq - XM_017025689
RefSeq - NM_001322286
RefSeq - NM_001322290
RefSeq - NM_001322291
RefSeq - NM_145756
RefSeq - XM_006722432
RefSeq - XM_017025687
RefSeq - XM_017025688
RefSeq Peptide - NP_665699
RefSeq Peptide - NP_001309215
RefSeq Peptide - NP_001309219
RefSeq Peptide - NP_001309220
swissprot - Q96N95
swissprot - K7ERR8
swissprot - K7EK38
Ensembl - ENSG00000186496
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZNF24 / P17028 / zinc finger protein 24ENSG0000017246658
Q9H4T2 / ZSCAN16 / zinc finger and SCAN domain containing 16ENSG0000019681245
Q9Y5A6 / ZSCAN21 / zinc finger and SCAN domain containing 21ENSG0000016652943
P17029 / ZKSCAN1 / zinc finger with KRAB and SCAN domains 1ENSG0000010626143
O15535 / ZSCAN9 / zinc finger and SCAN domain containing 9ENSG0000013718542
P49910 / ZNF165 / zinc finger protein 165ENSG0000019727942
Q15776 / ZKSCAN8 / zinc finger with KRAB and SCAN domains 8ENSG0000019831542
Q86W11 / ZSCAN30 / zinc finger and SCAN domain containing 30ENSG0000018681442
Q969J2 / ZKSCAN4 / zinc finger with KRAB and SCAN domains 4ENSG0000018762642
Q3MJ62 / ZSCAN23 / zinc finger and SCAN domain containing 23ENSG0000018798741
Q9UNY5 / ZNF232 / zinc finger protein 232ENSG0000016784041
O43309 / ZSCAN12 / zinc finger and SCAN domain containing 12ENSG0000015869141
Q9BRR0 / ZKSCAN3 / zinc finger with KRAB and SCAN domains 3ENSG0000018929841
Q96LW9 / ZSCAN31 / zinc finger and SCAN domain containing 31ENSG0000023510939
Q16670 / ZSCAN26 / zinc finger and SCAN domain containing 26ENSG0000019706237
Q8NF99 / ZNF397 / zinc finger protein 397ENSG0000018681237
P10073 / ZSCAN22 / zinc finger and SCAN domain containing 22ENSG0000018231836


Protein motifs (from Interpro)
Interpro ID Name
 IPR003309  SCAN domain
 IPR008916  Retrovirus capsid, C-terminal
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr