ENSG00000106261


Homo sapiens

Features
Gene ID: ENSG00000106261
  
Biological name :ZKSCAN1
  
Synonyms : P17029 / zinc finger with KRAB and SCAN domains 1 / ZKSCAN1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: q22.1
Gene start: 100015572
Gene end: 100041689
  
Corresponding Affymetrix probe sets: 1557953_at (Human Genome U133 Plus 2.0 Array)   214670_at (Human Genome U133 Plus 2.0 Array)   214900_at (Human Genome U133 Plus 2.0 Array)   225221_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000480305
Ensembl peptide - ENSP00000323148
Ensembl peptide - ENSP00000394445
Ensembl peptide - ENSP00000409172
Ensembl peptide - ENSP00000443508
NCBI entrez gene - 7586     See in Manteia.
OMIM - 601260
RefSeq - XM_011516559
RefSeq - NM_001287054
RefSeq - NM_001287055
RefSeq - NM_001346580
RefSeq - NM_001346581
RefSeq - NM_003439
RefSeq - XM_005250565
RefSeq Peptide - NP_001333509
RefSeq Peptide - NP_001333510
RefSeq Peptide - NP_003430
RefSeq Peptide - NP_001273983
RefSeq Peptide - NP_001273984
swissprot - P17029
swissprot - E9PC66
swissprot - C9JRM9
swissprot - B3KRF7
Ensembl - ENSG00000106261
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q8BGS3ENSMUSG00000029729Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q15776 / ZKSCAN8 / zinc finger with KRAB and SCAN domains 8ENSG0000019831546
Q969J2 / ZKSCAN4 / zinc finger with KRAB and SCAN domains 4ENSG0000018762641
Q9BRR0 / ZKSCAN3 / zinc finger with KRAB and SCAN domains 3ENSG0000018929841
Q86W11 / ZSCAN30 / zinc finger and SCAN domain containing 30ENSG0000018681439
O43309 / ZSCAN12 / zinc finger and SCAN domain containing 12ENSG0000015869139
Q9Y5A6 / ZSCAN21 / zinc finger and SCAN domain containing 21ENSG0000016652938
Q16670 / ZSCAN26 / zinc finger and SCAN domain containing 26ENSG0000019706237
P49910 / ZNF165 / zinc finger protein 165ENSG0000019727936
Q9UNY5 / ZNF232 / zinc finger protein 232ENSG0000016784035
P10073 / ZSCAN22 / zinc finger and SCAN domain containing 22ENSG0000018231834
Q8NF99 / ZNF397 / zinc finger protein 397ENSG0000018681234
Q96LW9 / ZSCAN31 / zinc finger and SCAN domain containing 31ENSG0000023510933
O15535 / ZSCAN9 / zinc finger and SCAN domain containing 9ENSG0000013718533
ZNF24 / P17028 / zinc finger protein 24ENSG0000017246631
Q9H4T2 / ZSCAN16 / zinc finger and SCAN domain containing 16ENSG0000019681231
Q3MJ62 / ZSCAN23 / zinc finger and SCAN domain containing 23ENSG0000018798731
Q96N95 / ZNF396 / zinc finger protein 396ENSG0000018649625


Protein motifs (from Interpro)
Interpro ID Name
 IPR001909  Krueppel-associated box
 IPR003309  SCAN domain
 IPR008916  Retrovirus capsid, C-terminal
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR036051  KRAB domain superfamily
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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