ENSMUSG00000029729


Mus musculus

Features
Gene ID: ENSMUSG00000029729
  
Biological name :Zkscan1
  
Synonyms : Q8BGS3 / zinc finger with KRAB and SCAN domains 1 / Zkscan1
  
Possible biological names infered from orthology : P17029
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: G2
Gene start: 138085084
Gene end: 138107822
  
Corresponding Affymetrix probe sets: 10526726 (MoGene1.0st)   1418801_at (Mouse Genome 430 2.0 Array)   1429152_at (Mouse Genome 430 2.0 Array)   1439908_at (Mouse Genome 430 2.0 Array)   1440771_at (Mouse Genome 430 2.0 Array)   1447944_at (Mouse Genome 430 2.0 Array)   1453051_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000019660
Ensembl peptide - ENSMUSP00000068480
Ensembl peptide - ENSMUSP00000106587
Ensembl peptide - ENSMUSP00000106588
NCBI entrez gene - 74570     See in Manteia.
MGI - MGI:1921820
RefSeq - XM_011240958
RefSeq - NM_029869
RefSeq - NM_133906
RefSeq - XM_006504628
RefSeq Peptide - NP_084145
RefSeq Peptide - NP_598667
swissprot - Q8BGS3
Ensembl - ENSMUSG00000029729
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P17029ENSG00000106261Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Zkscan8 / zinc finger with KRAB and SCAN domains 8 / Q15776*ENSMUSG0000006389445
Zfp397 / zinc finger protein 397 / Q8NF99* / ZNF397*ENSMUSG0000002427640
Zkscan3 / zinc finger with KRAB and SCAN domains 3 / Q9BRR0* / Q969J2* / ZKSCAN4* / zinc finger with KRAB and SCAN domains 4*ENSMUSG0000002132738
Q07231 / Zscan21 / zinc finger and SCAN domain containing 21 / Q9Y5A6*ENSMUSG0000003701736
Zkscan4 / zinc finger with KRAB and SCAN domains 4 / Q969J2* / Q9BRR0* / ZKSCAN3* / zinc finger with KRAB and SCAN domains 3*ENSMUSG0000005493136
Q5RJ54 / Zscan26 / zinc finger and SCAN domain containing 26 / Q16670*ENSMUSG0000002222834
Q9Z1D7 / Zscan12 / zinc finger and SCAN domain containing 12 / O43309*ENSMUSG0000003672134
Zscan22 / zinc finger and SCAN domain containing 22 / P10073*ENSMUSG0000005471532
Zfp24 / Q91VN1 / zinc finger protein 24 / ZNF24* / P17028*ENSMUSG0000005146930


Protein motifs (from Interpro)
Interpro ID Name
 IPR001909  Krueppel-associated box
 IPR003309  SCAN domain
 IPR008916  Retrovirus capsid, C-terminal
 IPR013087  Zinc finger C2H2-type
 IPR036051  KRAB domain superfamily
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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