ENSMUSG00000054931


Mus musculus

Features
Gene ID: ENSMUSG00000054931
  
Biological name :Zkscan4
  
Synonyms : zinc finger with KRAB and SCAN domains 4 / Zkscan4
  
Possible biological names infered from orthology : Q969J2 / Q9BRR0 / zinc finger with KRAB and SCAN domains 3 / ZKSCAN3
  
Species: Mus musculus
  
Chr. number: 13
Strand: 1
Band: A3.1
Gene start: 21478907
Gene end: 21485507
  
Corresponding Affymetrix probe sets: 10403929 (MoGene1.0st)   1435993_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000153278
Ensembl peptide - ENSMUSP00000054604
NCBI entrez gene - 544922     See in Manteia.
MGI - MGI:3649412
RefSeq - NM_001039115
RefSeq Peptide - NP_001034204
swissprot - A0A286YD55
swissprot - Q5SZT6
Ensembl - ENSMUSG00000054931
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q969J2ENSG00000187626Homo sapiens
 Q9BRR0ENSG00000189298Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Zkscan3 / zinc finger with KRAB and SCAN domains 3 / Q9BRR0* / Q969J2* / ZKSCAN4* / zinc finger with KRAB and SCAN domains 4*ENSMUSG0000002132777
Q8BGS3 / Zkscan1 / zinc finger with KRAB and SCAN domains 1 / P17029*ENSMUSG0000002972942
Zkscan8 / zinc finger with KRAB and SCAN domains 8 / Q15776*ENSMUSG0000006389442
Zfp397 / zinc finger protein 397 / Q8NF99* / ZNF397*ENSMUSG0000002427640
Q07231 / Zscan21 / zinc finger and SCAN domain containing 21 / Q9Y5A6*ENSMUSG0000003701740
Q9Z1D7 / Zscan12 / zinc finger and SCAN domain containing 12 / O43309*ENSMUSG0000003672138
Zscan22 / zinc finger and SCAN domain containing 22 / P10073*ENSMUSG0000005471537
Q5RJ54 / Zscan26 / zinc finger and SCAN domain containing 26 / Q16670*ENSMUSG0000002222835
Zfp24 / Q91VN1 / zinc finger protein 24 / ZNF24* / P17028*ENSMUSG0000005146931


Protein motifs (from Interpro)
Interpro ID Name
 IPR003309  SCAN domain
 IPR008916  Retrovirus capsid, C-terminal
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr