ENSG00000196460


Homo sapiens

Features
Gene ID: ENSG00000196460
  
Biological name :RFX8
  
Synonyms : Q6ZV50 / RFX8 / RFX family member 8, lacking RFX DNA binding domain
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q11.2
Gene start: 101397361
Gene end: 101474703
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSP00000494216
Ensembl peptide - ENSP00000494249
Ensembl peptide - ENSP00000401536
Ensembl peptide - ENSP00000422968
Ensembl peptide - ENSP00000424661
NCBI entrez gene - 731220     See in Manteia.
RefSeq - XM_017004854
RefSeq - XM_011511778
RefSeq - XM_017004851
RefSeq - XM_017004852
RefSeq - XM_017004853
RefSeq - NM_001145664
RefSeq - XM_011511771
RefSeq - XM_011511772
RefSeq - XM_011511773
RefSeq - XM_011511776
RefSeq - XM_011511777
RefSeq Peptide - NP_001139136
swissprot - E9PDA6
swissprot - D6RAX4
swissprot - Q6ZV50
Ensembl - ENSG00000196460
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RFX8ENSGALG00000045388Gallus gallus
 Rfx8ENSMUSG00000057173Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RFX6 / Q8HWS3 / regulatory factor X6ENSG0000018500223
RFX4 / Q33E94 / regulatory factor X4ENSG0000011178322
RFX2 / P48378 / regulatory factor X2ENSG0000008790320
RFX3 / P48380 / regulatory factor X3ENSG0000008029819
RFX1 / P22670 / regulatory factor X1ENSG0000013200519
RFX7 / Q2KHR2 / regulatory factor X7ENSG0000018182714
RFX5 / P48382 / regulatory factor X5ENSG000001433907


Protein motifs (from Interpro)
Interpro ID Name
 IPR003150  DNA-binding RFX-type winged-helix domain
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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