ENSG00000143390


Homo sapiens

Features
Gene ID: ENSG00000143390
  
Biological name :RFX5
  
Synonyms : P48382 / regulatory factor X5 / RFX5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q21.3
Gene start: 151340640
Gene end: 151347357
  
Corresponding Affymetrix probe sets: 202963_at (Human Genome U133 Plus 2.0 Array)   202964_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000409187
Ensembl peptide - ENSP00000405067
Ensembl peptide - ENSP00000412900
Ensembl peptide - ENSP00000415012
Ensembl peptide - ENSP00000413153
Ensembl peptide - ENSP00000290524
Ensembl peptide - ENSP00000357864
Ensembl peptide - ENSP00000376502
Ensembl peptide - ENSP00000387618
Ensembl peptide - ENSP00000389130
Ensembl peptide - ENSP00000390720
Ensembl peptide - ENSP00000390769
Ensembl peptide - ENSP00000396810
Ensembl peptide - ENSP00000398666
Ensembl peptide - ENSP00000399095
Ensembl peptide - ENSP00000399372
NCBI entrez gene - 5993     See in Manteia.
OMIM - 601863
RefSeq - XM_017002000
RefSeq - NM_000449
RefSeq - NM_001025603
RefSeq - XM_005245405
RefSeq - XM_005245406
RefSeq - XM_011509847
RefSeq - XM_011509848
RefSeq - XM_011509849
RefSeq - XM_011509850
RefSeq - XM_017001999
RefSeq Peptide - NP_001020774
RefSeq Peptide - NP_000440
swissprot - P48382
swissprot - A0A0A0MSM9
swissprot - A0A0A0MT34
swissprot - A0A0A0MSQ2
swissprot - F2Z2G0
swissprot - F6R6G4
swissprot - F6S3S0
swissprot - F6UE82
swissprot - F6X9D6
swissprot - F8W689
swissprot - F8WFE4
swissprot - F8WDU3
swissprot - H0Y4B4
Ensembl - ENSG00000143390
  
Related genetic diseases (OMIM): 209920 - Bare lymphocyte syndrome, type II, complementation group C, 209920

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rfx5ENSDARG00000063258Danio rerio
 RFX5ENSGALG00000000836Gallus gallus
 Rfx5ENSMUSG00000005774Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RFX7 / Q2KHR2 / regulatory factor X7ENSG0000018182727
RFX1 / P22670 / regulatory factor X1ENSG0000013200514
RFX6 / Q8HWS3 / regulatory factor X6ENSG0000018500213
RFX4 / Q33E94 / regulatory factor X4ENSG0000011178312
RFX2 / P48378 / regulatory factor X2ENSG0000008790311
RFX3 / P48380 / regulatory factor X3ENSG0000008029811
RFX8 / Q6ZV50 / RFX family member 8, lacking RFX DNA binding domainENSG000001964605


Protein motifs (from Interpro)
Interpro ID Name
 IPR003150  DNA-binding RFX-type winged-helix domain
 IPR029298  RFX5, C-terminal
 IPR033486  DNA-binding protein RFX5
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IC
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity NAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0001080 Biliary tract abnormality 
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 HP:0001508 Failure to thrive 
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 HP:0001875 Neutropenia 
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 HP:0002024 Malabsorption 
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 HP:0002383 Encephalitis 
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 HP:0002583 Severe colitis 
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 HP:0002718 Recurrent bacterial infections 
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 HP:0002728 Chronic mucocutaneous candidiasis 
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 HP:0002783 Recurrent lower respiratory tract infections 
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 HP:0002788 Recurrent upper respiratory tract infections 
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 HP:0002841 Fungal infections, recurrent 
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 HP:0002965 Cutaneous anergy 
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 HP:0003139 Panhypogammaglobulinemia 
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 HP:0004385 Protracted diarrhea 
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 HP:0004429 Recurrent viral infections 
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 HP:0004432 Agammaglobulinemia 
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 HP:0005386 Frequent bacterial, viral, protozoan, and fungal infections 
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 HP:0006562 Viral hepatitis 
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 HP:0007041 Chronic lymphocytic meningitis 
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 HP:0011473 Villous atrophy "The enteric villi are atrophic or absent." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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