ENSG00000198691


Homo sapiens

Features
Gene ID: ENSG00000198691
  
Biological name :ABCA4
  
Synonyms : ABCA4 / ATP binding cassette subfamily A member 4 / P78363
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p22.1
Gene start: 93992835
Gene end: 94121132
  
Corresponding Affymetrix probe sets: 1569102_at (Human Genome U133 Plus 2.0 Array)   210082_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000359245
Ensembl peptide - ENSP00000439707
NCBI entrez gene - 24     See in Manteia.
OMIM - 601691
RefSeq - NM_000350
RefSeq Peptide - NP_000341
swissprot - P78363
swissprot - F6TT59
Ensembl - ENSG00000198691
  
Related genetic diseases (OMIM): 153800 - {Macular degeneration, age-related, 2}, 153800
  248200 - Fundus flavimaculatus, 248200
  601718 - Retinitis pigmentosa 19, 601718
  604116 - Cone-rod dystrophy 3, 604116
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 abca4aENSDARG00000057169Danio rerio
 abca4bENSDARG00000062661Danio rerio
 ABCA4ENSGALG00000005752Gallus gallus
 Abca4ENSMUSG00000028125Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABCA1 / O95477 / ATP binding cassette subfamily A member 1ENSG0000016502950
ABCA7 / Q8IZY2 / ATP binding cassette subfamily A member 7ENSG0000006468743
ABCA2 / Q9BZC7 / ATP binding cassette subfamily A member 2ENSG0000010733137
ABCA12 / Q86UK0 / ATP binding cassette subfamily A member 12ENSG0000014445231
ABCA13 / Q86UQ4 / ATP binding cassette subfamily A member 13ENSG0000017986931
ABCA3 / Q99758 / ATP binding cassette subfamily A member 3ENSG0000016797227
ABCA9 / Q8IUA7 / ATP binding cassette subfamily A member 9ENSG0000015425819
ABCA8 / O94911 / ATP binding cassette subfamily A member 8ENSG0000014133819
ABCA6 / Q8N139 / ATP binding cassette subfamily A member 6ENSG0000015426218
ABCA5 / Q8WWZ7 / ATP binding cassette subfamily A member 5ENSG0000015426518
ABCA10 / Q8WWZ4 / ATP binding cassette subfamily A member 10ENSG0000015426317


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR005951  Retinal-specific ATP-binding cassette transporter
 IPR017871  ABC transporter, conserved site
 IPR026082  ABC transporter A
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001523 retinoid metabolic process TAS
 biological_processGO:0006649 phospholipid transfer to membrane IEA
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0007603 phototransduction, visible light TAS
 biological_processGO:0045332 phospholipid translocation IDA
 biological_processGO:0045494 photoreceptor cell maintenance IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IBA
 cellular_componentGO:0097381 photoreceptor disc membrane TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004012 phospholipid-translocating ATPase activity IEA
 molecular_functionGO:0005215 transporter activity TAS
 molecular_functionGO:0005395 eye pigment precursor transporter activity TAS
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0005548 phospholipid transporter activity IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA
 molecular_functionGO:0090555 phosphatidylethanolamine-translocating ATPase activity IDA


Pathways (from Reactome)
Pathway description
Retinoid cycle disease events
The canonical retinoid cycle in rods (twilight vision)
ABC-family proteins mediated transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000035 Abnormality of the testis 
Show

 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
Show

 HP:0000405 Hearing loss, conductive 
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
Show

 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
Show

 HP:0000493 Abnormality of the fovea 
Show

 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
Show

 HP:0000505 Impaired vision 
Show

 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
Show

 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000543 Pale optic disks 
Show

 HP:0000548 Cone-rod dystrophy 
Show

 HP:0000551 Abnormal color vision 
Show

 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
Show

 HP:0000572 Visual loss 
Show

 HP:0000602 Ophthalmoplegia 
Show

 HP:0000603 Central scotoma 
Show

 HP:0000608 Macular degeneration 
Show

 HP:0000610 Abnormality of the choroid 
Show

 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
Show

 HP:0000618 Blindness 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000649 Abnormality of vision evoked potentials 
Show

 HP:0000662 Night blindness 
Show

 HP:0000842 Hyperinsulinemia 
Show

 HP:0000987 Scarring 
Show

 HP:0001133 Constricted visual fields 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
Show

 HP:0005978 Noninsulin-dependent diabetes mellitus 
Show

 HP:0007663 Decreased central vision 
Show

 HP:0007675 Progressive night blindness 
Show

 HP:0007703 Abnormal retinal pigmentation 
Show

 HP:0007704 Abnormal eye movements, paroxysmal 
Show

 HP:0007722 Loss of retinal pigment epithelium 
Show

 HP:0007737 Bony spicule pigmentary retinopathy 
Show

 HP:0007814 Salt and pepper retinopathy, early 
Show

 HP:0007843 Attenuation of retinal blood vessels 
Show

 HP:0008002 Macular pigmentary changes 
Show

 HP:0008035 Retinitis pigmentosa inversa 
Show

 HP:0008046 Abnormality of the retinal vasculature 
Show

 HP:0008059 Aplasia/Hypoplasia of the macula 
Show

 HP:0008736 Hypoplasia of penis 
Show

 HP:0011504 Bull s eye maculopathy "Progressive maculopathy characterized by concentric regions of hyper- and hypo-pigmentation." [DDD:gblack]
Show

 HP:0030329 Retinal thinning "Reduced anteroposterior thickness of the retina. This phenotype can be appreciated by retinal optical coherence tomography (OCT)." [HPO:probinson]
Show

 HP:0030500 Yellow/white lesions of the macula 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr