ENSG00000154265


Homo sapiens

Features
Gene ID: ENSG00000154265
  
Biological name :ABCA5
  
Synonyms : ABCA5 / ATP binding cassette subfamily A member 5 / Q8WWZ7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q24.3
Gene start: 69244311
Gene end: 69327244
  
Corresponding Affymetrix probe sets: 213353_at (Human Genome U133 Plus 2.0 Array)   241705_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000467672
Ensembl peptide - ENSP00000467882
Ensembl peptide - ENSP00000467815
Ensembl peptide - ENSP00000376443
Ensembl peptide - ENSP00000465351
Ensembl peptide - ENSP00000465766
Ensembl peptide - ENSP00000466662
Ensembl peptide - ENSP00000466931
Ensembl peptide - ENSP00000467251
Ensembl peptide - ENSP00000467448
Ensembl peptide - ENSP00000467524
NCBI entrez gene - 23461     See in Manteia.
OMIM - 612503
RefSeq - NM_172232
RefSeq - NM_018672
RefSeq Peptide - NP_061142
RefSeq Peptide - NP_758424
swissprot - K7EPM3
swissprot - K7EQ50
swissprot - Q6N017
swissprot - A0A075B778
swissprot - Q8WWZ7
swissprot - K7EJW6
swissprot - K7EKS9
swissprot - K7EMV2
swissprot - K7ENF9
Ensembl - ENSG00000154265
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 abca5ENSDARG00000074041Danio rerio
 ABCA5ENSGALG00000004333Gallus gallus
 Abca5ENSMUSG00000018800Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABCA9 / Q8IUA7 / ATP binding cassette subfamily A member 9ENSG0000015425841
ABCA8 / O94911 / ATP binding cassette subfamily A member 8ENSG0000014133841
ABCA10 / Q8WWZ4 / ATP binding cassette subfamily A member 10ENSG0000015426340
ABCA6 / Q8N139 / ATP binding cassette subfamily A member 6ENSG0000015426240
ABCA1 / O95477 / ATP binding cassette subfamily A member 1ENSG0000016502926
ABCA3 / Q99758 / ATP binding cassette subfamily A member 3ENSG0000016797225
ABCA4 / P78363 / ATP binding cassette subfamily A member 4ENSG0000019869125
ABCA2 / Q9BZC7 / ATP binding cassette subfamily A member 2ENSG0000010733125
ABCA7 / Q8IZY2 / ATP binding cassette subfamily A member 7ENSG0000006468724
ABCA13 / Q86UQ4 / ATP binding cassette subfamily A member 13ENSG0000017986924
ABCA12 / Q86UK0 / ATP binding cassette subfamily A member 12ENSG0000014445224


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR017871  ABC transporter, conserved site
 IPR026082  ABC transporter A
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030367  ATP-binding cassette subfamily A member 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006869 lipid transport IBA
 biological_processGO:0010745 negative regulation of macrophage derived foam cell differentiation ISS
 biological_processGO:0030301 cholesterol transport IEA
 biological_processGO:0033344 cholesterol efflux ISS
 biological_processGO:0034375 high-density lipoprotein particle remodeling ISS
 biological_processGO:0043691 reverse cholesterol transport IC
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005764 lysosome ISS
 cellular_componentGO:0005765 lysosomal membrane TAS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005770 late endosome ISS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005319 lipid transporter activity TAS
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA


Pathways (from Reactome)
Pathway description
ABC transporters in lipid homeostasis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000169 Gingival fibromatosis "Gingival fibromatosis is characterized by a slowly progressive benign enlargement of the oral gingival tissues. The condition results in the teeth being partially or totally engulfed by keratinized gingiva, causing aesthetic and functional problems. Both genetic and pharmacologically induced forms of gingival fibromatosis are known. The most common genetic form, hereditary gingival fibromatosis (HGF), is usually transmitted as an autosomal dominant trait, although sporadic cases are common and autosomal recessive inheritance has been reported." [HPO:curators]
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 HP:0000212 Gingival hyperplasia 
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 HP:0000280 Coarse facial features 
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 HP:0000574 Thick eyebrows 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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