ENSG00000165029


Homo sapiens

Features
Gene ID: ENSG00000165029
  
Biological name :ABCA1
  
Synonyms : ABCA1 / ATP binding cassette subfamily A member 1 / O95477
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: q31.1
Gene start: 104781002
Gene end: 104928237
  
Corresponding Affymetrix probe sets: 1570279_at (Human Genome U133 Plus 2.0 Array)   203504_s_at (Human Genome U133 Plus 2.0 Array)   203505_at (Human Genome U133 Plus 2.0 Array)   216066_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000363868
Ensembl peptide - ENSP00000416623
Ensembl peptide - ENSP00000363865
NCBI entrez gene - 19     See in Manteia.
OMIM - 600046
RefSeq - XM_017014382
RefSeq - XM_017014378
RefSeq - XM_017014379
RefSeq - XM_017014380
RefSeq - XM_017014381
RefSeq - NM_005502
RefSeq - XM_005251773
RefSeq - XM_005251776
RefSeq - XM_011518339
RefSeq - XM_011518340
RefSeq - XM_011518341
RefSeq - XM_011518342
RefSeq - XM_011518344
RefSeq Peptide - NP_005493
swissprot - B1AMI2
swissprot - B1AMI1
swissprot - O95477
Ensembl - ENSG00000165029
  
Related genetic diseases (OMIM): 143890 - {Coronary artery disease in familial hypercholesterolemia, protection against}, 143890
  205400 - Tangier disease, 205400
  604091 - HDL deficiency, type 2, 604091
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 abca1aENSDARG00000074635Danio rerio
 ABCA1ENSGALG00000015433Gallus gallus
 Abca1ENSMUSG00000015243Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABCA7 / Q8IZY2 / ATP binding cassette subfamily A member 7ENSG0000006468750
ABCA4 / P78363 / ATP binding cassette subfamily A member 4ENSG0000019869150
ABCA2 / Q9BZC7 / ATP binding cassette subfamily A member 2ENSG0000010733142
ABCA12 / Q86UK0 / ATP binding cassette subfamily A member 12ENSG0000014445232
ABCA13 / Q86UQ4 / ATP binding cassette subfamily A member 13ENSG0000017986931
ABCA3 / Q99758 / ATP binding cassette subfamily A member 3ENSG0000016797227
ABCA8 / O94911 / ATP binding cassette subfamily A member 8ENSG0000014133819
ABCA5 / Q8WWZ7 / ATP binding cassette subfamily A member 5ENSG0000015426519
ABCA9 / Q8IUA7 / ATP binding cassette subfamily A member 9ENSG0000015425819
ABCA6 / Q8N139 / ATP binding cassette subfamily A member 6ENSG0000015426219
ABCA10 / Q8WWZ4 / ATP binding cassette subfamily A member 10ENSG0000015426317


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR017871  ABC transporter, conserved site
 IPR026082  ABC transporter A
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002790 peptide secretion IEA
 biological_processGO:0006497 protein lipidation IEA
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006911 phagocytosis, engulfment IEA
 biological_processGO:0007040 lysosome organization IDA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IMP
 biological_processGO:0007189 adenylate cyclase-activating G-protein coupled receptor signaling pathway IMP
 biological_processGO:0007584 response to nutrient IEA
 biological_processGO:0008202 steroid metabolic process IEA
 biological_processGO:0008203 cholesterol metabolic process IDA
 biological_processGO:0010745 negative regulation of macrophage derived foam cell differentiation TAS
 biological_processGO:0010875 positive regulation of cholesterol efflux IMP
 biological_processGO:0010887 negative regulation of cholesterol storage TAS
 biological_processGO:0015914 phospholipid transport IEA
 biological_processGO:0016197 endosomal transport IDA
 biological_processGO:0019216 regulation of lipid metabolic process TAS
 biological_processGO:0030301 cholesterol transport IEA
 biological_processGO:0032367 intracellular cholesterol transport IMP
 biological_processGO:0032489 regulation of Cdc42 protein signal transduction IMP
 biological_processGO:0033344 cholesterol efflux IEA
 biological_processGO:0033700 phospholipid efflux IMP
 biological_processGO:0034380 high-density lipoprotein particle assembly TAS
 biological_processGO:0034616 response to laminar fluid shear stress IEP
 biological_processGO:0038027 apolipoprotein A-I-mediated signaling pathway IEA
 biological_processGO:0042157 lipoprotein metabolic process IEA
 biological_processGO:0042158 lipoprotein biosynthetic process IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0042632 cholesterol homeostasis TAS
 biological_processGO:0043691 reverse cholesterol transport IEA
 biological_processGO:0045332 phospholipid translocation IDA
 biological_processGO:0050702 interleukin-1 beta secretion IMP
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0055091 phospholipid homeostasis IMP
 biological_processGO:0060155 platelet dense granule organization IMP
 biological_processGO:0071222 cellular response to lipopolysaccharide IEA
 biological_processGO:0071300 cellular response to retinoic acid IEA
 biological_processGO:0071397 cellular response to cholesterol IEA
 biological_processGO:0071404 cellular response to low-density lipoprotein particle stimulus IEP
 biological_processGO:0090107 regulation of high-density lipoprotein particle assembly TAS
 biological_processGO:0098656 anion transmembrane transport IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0009897 external side of plasma membrane IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030139 endocytic vesicle IDA
 cellular_componentGO:0034364 high-density lipoprotein particle IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0045121 membrane raft IDA
 cellular_componentGO:0045335 phagocytic vesicle IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005102 signaling receptor binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0005543 phospholipid binding IC
 molecular_functionGO:0005548 phospholipid transporter activity IDA
 molecular_functionGO:0008509 anion transmembrane transporter activity IEA
 molecular_functionGO:0015485 cholesterol binding IC
 molecular_functionGO:0016887 ATPase activity IDA
 molecular_functionGO:0017127 cholesterol transporter activity IDA
 molecular_functionGO:0019905 syntaxin binding IPI
 molecular_functionGO:0031267 small GTPase binding IPI
 molecular_functionGO:0034185 apolipoprotein binding IPI
 molecular_functionGO:0034186 apolipoprotein A-I binding IPI
 molecular_functionGO:0034188 apolipoprotein A-I receptor activity IDA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA
 molecular_functionGO:0051117 ATPase binding IPI
 molecular_functionGO:0090554 phosphatidylcholine-translocating ATPase activity IDA
 molecular_functionGO:0090556 phosphatidylserine-translocating ATPase activity IDA


Pathways (from Reactome)
Pathway description
PPARA activates gene expression
Defective ABCA1 causes Tangier disease
HDL assembly


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000622 Blurred vision 
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 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
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 HP:0000958 Dry skin 
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 HP:0000991 Xanthomatosis "The presence of multiple xanthomas (xanthomata) in the skin. Xanthomas are yellowish, firm, lipid-laden nodules in the skin." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001349 Facial diplegia "Facial diplegia refers to simultaneous facial palsy (bilateral facial palsy is much rarer than unilateral facial palsy)." [HPO:curators]
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 HP:0001392 Abnormality of the liver 
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 HP:0001433 Hepatosplenomegaly 
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 HP:0001658 Myocardial infarction 
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 HP:0001677 Coronary artery disease 
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 HP:0001712 Left ventricular hypertrophy 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001903 Anemia 
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 HP:0002027 Abdominal pain 
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 HP:0002155 Hypertriglyceridemia 
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 HP:0002164 Nail dysplasia 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002730 Chronic noninfectious lymphadenopathy 
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 HP:0003146 Hypocholesterolemia 
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 HP:0003233 Decreased HDL cholesterol 
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 HP:0003396 Syringomyelia 
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003477 Axonal neuropathy 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0004943 Accelerated atherosclerosis 
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 HP:0005145 Coronary artery stenosis 
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 HP:0006901 Impaired thermal sensitivity 
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 HP:0007133 Progressive peripheral neuropathy 
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 HP:0007328 Decreased pain sensation "Reduced ability to perceive painful stimuli." [HPO:curators]
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 HP:0007759 Corneal opacities, not impairing visual acuity 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0010829 Loss of temperature sensation 
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 HP:0011096 Peripheral demyelination "A loss of myelin from the internode regions along myelinated nerve fibers of the peripheral nervous system." [HPO:probinson]
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 HP:0030814 Orange discoloured tonsils "A phenomenon of orange colored oral tonsils. This feature is characteristic of Tangier disease and illustrated will by Figure 1 of PMID:19470903." [HPO:probinson, PMID:19470903]
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 HP:0100546 Carotid stenosis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000118137 APOA1 / P02647 / apolipoprotein A1  / reaction / complex
 ENSG00000072062 P17612 / PRKACA / protein kinase cAMP-activated catalytic subunit alpha  / reaction
 ENSG00000099904 Q9ULC8 / ZDHHC8 / zinc finger DHHC-type containing 8  / reaction
 ENSG00000142875 P22694 / PRKACB / protein kinase cAMP-activated catalytic subunit beta  / reaction
 ENSG00000165029 ABCA1 / O95477 / ATP binding cassette subfamily A member 1  / complex
 ENSG00000165059 P22612 / PRKACG / protein kinase cAMP-activated catalytic subunit gamma  / reaction






 

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