ENSGALG00000004228


Gallus gallus

Features
Gene ID: ENSGALG00000004228
  
Biological name :USP40
  
Synonyms : ubiquitin specific peptidase 40 / USP40
  
Possible biological names infered from orthology : Q8BWR4 / Q9NVE5
  
Species: Gallus gallus
  
Chr. number: 7
Strand: 1
Band:
Gene start: 5873857
Gene end: 5902664
  
Corresponding Affymetrix probe sets: Gga.17660.1.S1_at (Chicken Array)   GgaAffx.2613.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000006720
NCBI entrez gene - 100859211     See in Manteia.
RefSeq - XM_015289074
RefSeq - NM_001257318
RefSeq - XM_015289072
RefSeq - XM_015289073
RefSeq - XM_015289068
RefSeq - XM_015289069
RefSeq - XM_015289070
RefSeq - XM_015289071
RefSeq Peptide - NP_001244247
swissprot - E1BRT3
Ensembl - ENSGALG00000004228
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usp40ENSDARG00000071197Danio rerio
 USP40ENSG00000085982Homo sapiens
 Usp40ENSMUSG00000005501Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
USP47 / ubiquitin specific peptidase 47 / Q8BY87* / Q96K76*ENSGALG0000000556920
USP34 / ubiquitin carboxyl-terminal hydrolase 34 / Q6ZQ93* / Q70CQ2* / ubiquitin specific peptidase 34*ENSGALG0000000445515
USP48 / ubiquitin carboxyl-terminal hydrolase 48 / Q3V0C5* / Q86UV5* / ubiquitin specific peptidase 48*ENSGALG0000003085714
USP7 / ubiquitin specific peptidase 7 / Q93009*ENSGALG0000000730714
ENSGALG0000001623613
USP24 / ubiquitin specific peptidase 24 / B1AY13* / Q9UPU5*ENSGALG0000001080512
USP41* / USP18* / Q9WTV6* / Q3LFD5* / Q9UMW8* / ubiquitin specific peptidase 18* / ubiquitin specific peptidase 41*ENSGALG000000130577


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr