ENSG00000085982


Homo sapiens

Features
Gene ID: ENSG00000085982
  
Biological name :USP40
  
Synonyms : Q9NVE5 / ubiquitin specific peptidase 40 / USP40
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q37.1
Gene start: 233475520
Gene end: 233566782
  
Corresponding Affymetrix probe sets: 225085_at (Human Genome U133 Plus 2.0 Array)   225089_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000408853
Ensembl peptide - ENSP00000407696
Ensembl peptide - ENSP00000415434
Ensembl peptide - ENSP00000251722
Ensembl peptide - ENSP00000386664
Ensembl peptide - ENSP00000387898
Ensembl peptide - ENSP00000388121
Ensembl peptide - ENSP00000394133
Ensembl peptide - ENSP00000394154
NCBI entrez gene - 55230     See in Manteia.
OMIM - 610570
RefSeq - XM_017004428
RefSeq - XM_011511396
RefSeq - XM_011511397
RefSeq - XM_011511398
RefSeq - XM_011511399
RefSeq - XM_011511400
RefSeq - XM_017004426
RefSeq - XM_017004427
RefSeq - NM_018218
RefSeq - XM_006712612
RefSeq Peptide - NP_060688
swissprot - H7C0C4
swissprot - H7C2T9
swissprot - H7BZ71
swissprot - C9JK14
swissprot - Q9NVE5
swissprot - H7C307
Ensembl - ENSG00000085982
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usp40ENSDARG00000071197Danio rerio
 USP40ENSGALG00000004228Gallus gallus
 Usp40ENSMUSG00000005501Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
USP47 / Q96K76 / ubiquitin specific peptidase 47ENSG0000017024222
USP34 / Q70CQ2 / ubiquitin specific peptidase 34ENSG0000011546415
USP7 / Q93009 / ubiquitin specific peptidase 7ENSG0000018755515
USP9X / Q93008 / ubiquitin specific peptidase 9, X-linkedENSG0000012448614
USP24 / Q9UPU5 / ubiquitin specific peptidase 24ENSG0000016240213
USP48 / Q86UV5 / ubiquitin specific peptidase 48ENSG0000009068613
USP9Y / O00507 / ubiquitin specific peptidase 9, Y-linkedENSG0000011437413
USP18 / Q9UMW8 / ubiquitin specific peptidase 18ENSG000001849797
USP41 / Q3LFD5 / ubiquitin specific peptidase 41ENSG000001611336


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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