ENSDARG00000071197


Danio rerio

Features
Gene ID: ENSDARG00000071197
  
Biological name :usp40
  
Synonyms : ubiquitin specific peptidase 40 / usp40
  
Possible biological names infered from orthology : Q8BWR4 / Q9NVE5
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 8652310
Gene end: 8684070
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000095869
NCBI entrez gene - 402834     See in Manteia.
swissprot - F1Q7D2
ZFIN ID - ZDB-GENE-060518-5
Ensembl - ENSDARG00000071197
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP40ENSGALG00000004228Gallus gallus
 USP40ENSG00000085982Homo sapiens
 Usp40ENSMUSG00000005501Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp47 / ubiquitin specific peptidase 47 / Q96K76*ENSDARG0000010264519
USP34 / ubiquitin specific peptidase 34 / Q70CQ2*ENSDARG0000010225215
usp7 / ubiquitin specific peptidase 7 (herpes virus-associated) / Q93009* / ubiquitin specific peptidase 7*ENSDARG0000007371013
usp9 / ubiquitin specific peptidase 9ENSDARG0000001370813
usp48 / ubiquitin specific peptidase 48 / Q3V0C5* / Q86UV5*ENSDARG0000009030112
si:ch211-212k18.13ENSDARG000001056149
usp18 / ubiquitin specific peptidase 18 / USP41* / Q9WTV6* / Q9UMW8* / Q3LFD5* / ubiquitin specific peptidase 41*ENSDARG000000880786
usp24 / ubiquitin specific peptidase 24ENSDARG000000599251


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0039021 pronephric glomerulus development IMP
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
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 ZFA:0001117 post-vent region post-vent region curved dorsal , abnormal
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 ZFA:0001557 pronephric glomerulus pronephric glomerulus disorganized , abnormal
pronephric glomerulus cell junction decreased amount , abnormal
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 ZFA:0001673 pronephric podocyte pronephric podocyte podocyte foot decreased thickness , abnormal
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 ZFA:0005312 pronephric capsular space pronephric capsular space dilated , abnormal
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 ZFA:0005313 pronephric glomerular basement membrane pronephric glomerular basement membrane decreased functionality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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