ENSMUSG00000005501


Mus musculus

Features
Gene ID: ENSMUSG00000005501
  
Biological name :Usp40
  
Synonyms : Q8BWR4 / ubiquitin specific peptidase 40 / Usp40
  
Possible biological names infered from orthology : Q9NVE5
  
Species: Mus musculus
  
Chr. number: 1
Strand: -1
Band: D
Gene start: 87945119
Gene end: 88008551
  
Corresponding Affymetrix probe sets: 10356423 (MoGene1.0st)   1435901_at (Mouse Genome 430 2.0 Array)   1438242_at (Mouse Genome 430 2.0 Array)   1446209_at (Mouse Genome 430 2.0 Array)   1458079_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000140240
Ensembl peptide - ENSMUSP00000140574
Ensembl peptide - ENSMUSP00000038533
Ensembl peptide - ENSMUSP00000140107
NCBI entrez gene - 227334     See in Manteia.
MGI - MGI:2443184
RefSeq - NM_001198573
RefSeq - XM_006529477
RefSeq - NM_001033291
RefSeq Peptide - NP_001028463
RefSeq Peptide - NP_001185502
swissprot - A0A087WQL1
swissprot - Q8BWR4
swissprot - A0A087WRD2
Ensembl - ENSMUSG00000005501
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usp40ENSDARG00000071197Danio rerio
 USP40ENSGALG00000004228Gallus gallus
 USP40ENSG00000085982Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Usp47 / Q8BY87 / ubiquitin specific peptidase 47 / Q96K76*ENSMUSG0000005926321
Usp34 / Q6ZQ93 / ubiquitin specific peptidase 34 / Q70CQ2*ENSMUSG0000005634216
Usp7 / ubiquitin specific peptidase 7 / Q93009*ENSMUSG0000002271015
Usp9x / ubiquitin specific peptidase 9, X chromosome / Q93008* / ubiquitin specific peptidase 9, X-linked*ENSMUSG0000003101014
Usp9y / ubiquitin specific peptidase 9, Y chromosome / O00507* / ubiquitin specific peptidase 9, Y-linked*ENSMUSG0000006904414
Usp48 / Q3V0C5 / ubiquitin specific peptidase 48 / Q86UV5*ENSMUSG0000004341113
Usp24 / B1AY13 / ubiquitin specific peptidase 24 / Q9UPU5*ENSMUSG0000002851413
Usp18 / Q9WTV6 / ubiquitin specific peptidase 18 / USP41* / Q9UMW8* / Q3LFD5* / ubiquitin specific peptidase 41*ENSMUSG000000301077


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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