ENSDARG00000090301


Danio rerio

Features
Gene ID: ENSDARG00000090301
  
Biological name :usp48
  
Synonyms : ubiquitin specific peptidase 48 / usp48
  
Possible biological names infered from orthology : Q3V0C5 / Q86UV5
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 36449698
Gene end: 36475124
  
Corresponding Affymetrix probe sets: Dr.24012.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000111894
Ensembl peptide - ENSDARP00000131033
Ensembl peptide - ENSDARP00000130019
NCBI entrez gene - 100332674     See in Manteia.
RefSeq - XM_005172916
swissprot - E7EY58
swissprot - A0A0R4ID87
swissprot - A0A0R4IB93
ZFIN ID - ZDB-GENE-050522-197
Ensembl - ENSDARG00000090301
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP48ENSGALG00000030857Gallus gallus
 USP48ENSG00000090686Homo sapiens
 Usp48ENSMUSG00000043411Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp47 / ubiquitin specific peptidase 47 / Q96K76*ENSDARG0000010264516
USP34 / ubiquitin specific peptidase 34 / Q70CQ2*ENSDARG0000010225216
usp9 / ubiquitin specific peptidase 9ENSDARG0000001370814
usp40 / ubiquitin specific peptidase 40 / Q8BWR4* / Q9NVE5*ENSDARG0000007119714
usp7 / ubiquitin specific peptidase 7 (herpes virus-associated) / Q93009* / ubiquitin specific peptidase 7*ENSDARG0000007371013
si:ch211-212k18.13ENSDARG000001056149
usp18 / ubiquitin specific peptidase 18 / USP41* / Q9WTV6* / Q9UMW8* / Q3LFD5* / ubiquitin specific peptidase 41*ENSDARG000000880788
usp24 / ubiquitin specific peptidase 24ENSDARG000000599252


Protein motifs (from Interpro)
Interpro ID Name
 IPR000626  Ubiquitin domain
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR006615  Peptidase C19, ubiquitin-specific peptidase, DUSP domain
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain
 IPR029071  Ubiquitin-like domain superfamily
 IPR033841  Ubiquitin-specific peptidase 48


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:1904888 cranial skeletal system development IMP
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001117 post-vent region post-vent region necrotic , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
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 ZFA:0001405 ethmoid cartilage ethmoid cartilage absent , abnormal
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 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage malformed , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000030173 traf2a / Tnf receptor-associated factor 2a / TRAF2* / P39429* / Q12933* / TNF receptor associated factor 2*  / complex






 

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