ENSDARG00000102645


Danio rerio

Features
Gene ID: ENSDARG00000102645
  
Biological name :usp47
  
Synonyms : ubiquitin specific peptidase 47 / usp47
  
Possible biological names infered from orthology : Q8BY87 / Q96K76
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 65398161
Gene end: 65464416
  
Corresponding Affymetrix probe sets: Dr.14755.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000132347
Ensembl peptide - ENSDARP00000134662
NCBI entrez gene - 100101645     See in Manteia.
RefSeq - NM_001331129
RefSeq - XM_021477372
RefSeq Peptide - NP_001318058
swissprot - A0A0R4IKT6
swissprot - A0A0R4IFT8
ZFIN ID - ZDB-GENE-070719-7
Ensembl - ENSDARG00000102645
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP47ENSGALG00000005569Gallus gallus
 USP47ENSG00000170242Homo sapiens
 Usp47ENSMUSG00000059263Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp40 / ubiquitin specific peptidase 40 / Q8BWR4* / Q9NVE5*ENSDARG0000007119718
usp9 / ubiquitin specific peptidase 9ENSDARG0000001370814
usp7 / ubiquitin specific peptidase 7 (herpes virus-associated) / Q93009* / ubiquitin specific peptidase 7*ENSDARG0000007371014
usp48 / ubiquitin specific peptidase 48 / Q3V0C5* / Q86UV5*ENSDARG0000009030113
USP34 / ubiquitin specific peptidase 34 / Q70CQ2*ENSDARG0000010225213
si:ch211-212k18.13ENSDARG0000010561410
usp18 / ubiquitin specific peptidase 18 / USP41* / Q9WTV6* / Q9UMW8* / Q3LFD5* / ubiquitin specific peptidase 41*ENSDARG000000880786
usp24 / ubiquitin specific peptidase 24ENSDARG000000599252


Protein motifs (from Interpro)
Interpro ID Name
 IPR000626  Ubiquitin domain
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000003749 polb / polymerase (DNA directed), beta / P06746* / Q8K409* / DNA polymerase beta*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr