ENSDARG00000088078


Danio rerio

Features
Gene ID: ENSDARG00000088078
  
Biological name :usp18
  
Synonyms : ubiquitin specific peptidase 18 / usp18
  
Possible biological names infered from orthology : Q3LFD5 / Q9UMW8 / Q9WTV6 / ubiquitin specific peptidase 41 / USP41
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 5842433
Gene end: 5847937
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000104564
Ensembl peptide - ENSDARP00000152631
NCBI entrez gene - 100334535     See in Manteia.
RefSeq - XM_005164532
swissprot - E7EYZ1
ZFIN ID - ZDB-GENE-100210-2
Ensembl - ENSDARG00000088078
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000013057Gallus gallus
 USP18ENSG00000184979Homo sapiens
 USP41ENSG00000161133Homo sapiens
 Usp18ENSMUSG00000030107Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp47 / ubiquitin specific peptidase 47 / Q96K76*ENSDARG0000010264526
usp40 / ubiquitin specific peptidase 40 / Q8BWR4* / Q9NVE5*ENSDARG0000007119724
usp48 / ubiquitin specific peptidase 48 / Q3V0C5* / Q86UV5*ENSDARG0000009030124
si:ch211-212k18.13ENSDARG0000010561423
usp7 / ubiquitin specific peptidase 7 (herpes virus-associated) / Q93009* / ubiquitin specific peptidase 7*ENSDARG0000007371020
usp9 / ubiquitin specific peptidase 9ENSDARG0000001370820
USP34 / ubiquitin specific peptidase 34 / Q70CQ2*ENSDARG0000010225218
usp24 / ubiquitin specific peptidase 24ENSDARG000000599251


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:1904888 cranial skeletal system development IMP
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
ISG15 antiviral mechanism
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000084 yolk yolk deformed , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000135 notochord notochord decreased length , abnormal
Show

 ZFA:0000155 somite somite fused with somite , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased size , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk immature , abnormal
Show

 ZFA:0001117 post-vent region post-vent region necrotic , abnormal
post-vent region curled , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage morphology , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
Show

 ZFA:0001405 ethmoid cartilage ethmoid cartilage shape , abnormal
Show

 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage malformed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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