ENSDARG00000059925


Danio rerio

Features
Gene ID: ENSDARG00000059925
  
Biological name :usp24
  
Synonyms : ubiquitin specific peptidase 24 / usp24
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 7443224
Gene end: 7583486
  
Corresponding Affymetrix probe sets: Dr.10551.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000115893
Ensembl peptide - ENSDARP00000121275
Ensembl peptide - ENSDARP00000078325
NCBI entrez gene - 325631     See in Manteia.
swissprot - A8E7T1
swissprot - F1Q6K1
swissprot - F6NGH0
ZFIN ID - ZDB-GENE-030131-4356
Ensembl - ENSDARG00000059925
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp9 / ubiquitin specific peptidase 9ENSDARG0000001370826
USP34 / ubiquitin specific peptidase 34 / Q70CQ2*ENSDARG0000010225213
usp47 / ubiquitin specific peptidase 47 / Q96K76*ENSDARG000001026452
usp7 / ubiquitin specific peptidase 7 (herpes virus-associated) / Q93009* / ubiquitin specific peptidase 7*ENSDARG000000737102
usp40 / ubiquitin specific peptidase 40 / Q8BWR4* / Q9NVE5*ENSDARG000000711971
usp48 / ubiquitin specific peptidase 48 / Q3V0C5* / Q86UV5*ENSDARG000000903011
si:ch211-212k18.13ENSDARG000001056140
usp18 / ubiquitin specific peptidase 18 / USP41* / Q9WTV6* / Q9UMW8* / Q3LFD5* / ubiquitin specific peptidase 41*ENSDARG000000880780


Protein motifs (from Interpro)
Interpro ID Name
 IPR000626  Ubiquitin domain
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR009060  UBA-like superfamily
 IPR011989  Armadillo-like helical
 IPR015940  Ubiquitin-associated domain
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain
 IPR029071  Ubiquitin-like domain superfamily
 IPR033382  Ubiquitin-specific peptidase 24


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0021551 central nervous system morphogenesis IMP
 biological_processGO:1904888 cranial skeletal system development IMP
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000107 eye eye malformed , abnormal
Show

 ZFA:0000155 somite somite fused with somite , abnormal
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 ZFA:0001094 whole organism whole organism necrotic , abnormal
whole organism decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
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 ZFA:0001117 post-vent region post-vent region curled , abnormal
post-vent region necrotic , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
Show

 ZFA:0001405 ethmoid cartilage ethmoid cartilage absent , abnormal
Show

 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage malformed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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