ENSG00000184979


Homo sapiens

Features
Gene ID: ENSG00000184979
  
Biological name :USP18
  
Synonyms : Q9UMW8 / ubiquitin specific peptidase 18 / USP18
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: 1
Band: q11.21
Gene start: 18149899
Gene end: 18177397
  
Corresponding Affymetrix probe sets: 219211_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000215794
NCBI entrez gene - 11274     See in Manteia.
OMIM - 607057
RefSeq - NM_017414
RefSeq - XM_006724074
RefSeq Peptide - NP_059110
swissprot - Q9UMW8
Ensembl - ENSG00000184979
  
Related genetic diseases (OMIM): 617397 - Pseudo-TORCH syndrome 2, 617397
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usp18ENSDARG00000088078Danio rerio
 ENSGALG00000013057Gallus gallus
 Usp18ENSMUSG00000030107Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
USP41 / Q3LFD5 / ubiquitin specific peptidase 41ENSG0000016113382
USP47 / Q96K76 / ubiquitin specific peptidase 47ENSG0000017024227
USP9X / Q93008 / ubiquitin specific peptidase 9, X-linkedENSG0000012448624
USP9Y / O00507 / ubiquitin specific peptidase 9, Y-linkedENSG0000011437424
USP24 / Q9UPU5 / ubiquitin specific peptidase 24ENSG0000016240224
USP40 / Q9NVE5 / ubiquitin specific peptidase 40ENSG0000008598224
USP48 / Q86UV5 / ubiquitin specific peptidase 48ENSG0000009068623
USP34 / Q70CQ2 / ubiquitin specific peptidase 34ENSG0000011546423
USP7 / Q93009 / ubiquitin specific peptidase 7ENSG0000018755522


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination TAS
 biological_processGO:0050727 regulation of inflammatory response IMP
 biological_processGO:0060338 regulation of type I interferon-mediated signaling pathway TAS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0019785 ISG15-specific protease activity EXP
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity TAS


Pathways (from Reactome)
Pathway description
ISG15 antiviral mechanism
Ub-specific processing proteases
Regulation of IFNA signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000967 Petechiae 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001254 Lethargy 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001342 Cerebral hemorrhage "A cerebral hemorrhage (or intracerebral hemorrhage, ICH), is a type of intracranial hemorrhage that occurs within the brain tissue itself." [HPO:curators]
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 HP:0001410 Decreased liver function 
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 HP:0001541 Ascites 
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001662 Bradycardia 
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 HP:0001873 Thrombocytopenia 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002119 Ventriculomegaly 
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002282 Heterotopia 
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003577 Onset at birth 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000135341 MAP3K7 / O43318 / mitogen-activated protein kinase kinase kinase 7  / complex
 ENSG00000159110 IFNAR2 / P48551 / interferon alpha and beta receptor subunit 2  / reaction / complex
 ENSG00000100324 TAB1 / Q15750 / TGF-beta activated kinase 1 (MAP3K7) binding protein 1  / complex






 

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