ENSGALG00000005569


Gallus gallus

Features
Gene ID: ENSGALG00000005569
  
Biological name :USP47
  
Synonyms : ubiquitin specific peptidase 47 / USP47
  
Possible biological names infered from orthology : Q8BY87 / Q96K76
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 8163486
Gene end: 8216191
  
Corresponding Affymetrix probe sets: Gga.11069.1.S1_s_at (Chicken Array)   Gga.5374.1.S1_at (Chicken Array)   GgaAffx.20216.1.S1_s_at (Chicken Array)   GgaAffx.26533.1.S1_at (Chicken Array)   GgaAffx.3494.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008918
Ensembl peptide - ENSGALP00000042289
NCBI entrez gene - 423032     See in Manteia.
RefSeq - XM_015286370
RefSeq - NM_001199582
RefSeq - XM_015286368
RefSeq - XM_015286369
RefSeq Peptide - NP_001186511
swissprot - R4GJH4
swissprot - R9PXM3
Ensembl - ENSGALG00000005569
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usp47ENSDARG00000102645Danio rerio
 USP47ENSG00000170242Homo sapiens
 Usp47ENSMUSG00000059263Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
USP40 / ubiquitin specific peptidase 40 / Q8BWR4* / Q9NVE5*ENSGALG0000000422818
USP34 / ubiquitin carboxyl-terminal hydrolase 34 / Q6ZQ93* / Q70CQ2* / ubiquitin specific peptidase 34*ENSGALG0000000445514
USP7 / ubiquitin specific peptidase 7 / Q93009*ENSGALG0000000730714
USP48 / ubiquitin carboxyl-terminal hydrolase 48 / Q3V0C5* / Q86UV5* / ubiquitin specific peptidase 48*ENSGALG0000003085713
ENSGALG0000001623613
USP24 / ubiquitin specific peptidase 24 / B1AY13* / Q9UPU5*ENSGALG0000001080512
USP41* / USP18* / Q9WTV6* / Q3LFD5* / Q9UMW8* / ubiquitin specific peptidase 18* / ubiquitin specific peptidase 41*ENSGALG000000130577


Protein motifs (from Interpro)
Interpro ID Name
 IPR000626  Ubiquitin domain
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006284 base-excision repair IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0010972 negative regulation of G2/M transition of mitotic cell cycle IEA
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0030307 positive regulation of cell growth IEA
 biological_processGO:0034644 cellular response to UV IEA
 biological_processGO:0035520 monoubiquitinated protein deubiquitination IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0090263 positive regulation of canonical Wnt signaling pathway IEA
 biological_processGO:1902230 negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0019005 SCF ubiquitin ligase complex IEA
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA
 molecular_functionGO:0071987 WD40-repeat domain binding IEA
 molecular_functionGO:0101005 ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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