ENSGALG00000004526


Gallus gallus

Features
Gene ID: ENSGALG00000004526
  
Biological name :TNR
  
Synonyms : tenascin-R precursor / TNR
  
Possible biological names infered from orthology : Q8BYI9 / Q92752 / tenascin R
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 7030143
Gene end: 7079007
  
Corresponding Affymetrix probe sets: Gga.711.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000062658
Ensembl peptide - ENSGALP00000007195
NCBI entrez gene - 396213     See in Manteia.
RefSeq - XM_015290245
RefSeq - NM_205276
RefSeq - XM_015290244
RefSeq Peptide - NP_990607
swissprot - F1NPJ1
swissprot - A0A1L1RV09
Ensembl - ENSGALG00000004526
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tnrENSDARG00000020771Danio rerio
 TNRENSG00000116147Homo sapiens
 TnrENSMUSG00000015829Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TNC / tenascin C / P24821* / Q80YX1*ENSGALG0000003999045
TNN / tenascin N / Q80Z71* / Q9UQP3*ENSGALG0000000453829
FN1 / fibronectin 1 / P02751* / P11276* / Fibronectin Anastellin*ENSGALG0000000357822
TNXB* / P22105* / tenascin XB*ENSGALG0000004103116
FGA / fibrinogen alpha chain isoform 1 precursor / E9PV24* / P02671* / fibrinogen alpha chain* / Fibrinogen alpha chain Fibrinopeptide A Fibrinogen alpha chain*ENSGALG0000000926610
FGL1 / fibrinogen like 1 / Q08830*ENSGALG000000136068
ANGPTL4 / angiopoietin like 4 / Q9BY76* / Q9Z1P8* / Angiopoietin-related protein 4 *ENSGALG000000006198
ANGPTL3 / angiopoietin-related protein 3 precursor / Q9R182* / Q9Y5C1* / angiopoietin like 3* / Angiopoietin-related protein 3 ANGPTL3(17-224)*ENSGALG000000109788
FGB / fibrinogen beta chain / P02675* / Q8K0E8* / Fibrinogen beta chain Fibrinopeptide B Fibrinogen beta chain*ENSGALG000000092628
FGG / fibrinogen gamma chain / P02679* / Q8VCM7*ENSGALG000000092688
ANGPTL5 / Q86XS5* / angiopoietin like 5*ENSGALG000000171917
ENSGALG000000333147
ENSGALG000000452386
ANGPT1L / angiopoietin-related protein 1-like precursor ENSGALG000000415026
ENSGALG000000418336
ENSGALG000000428196
ENSGALG000000464826
ENSGALG000000170296
ENSGALG000000275206


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR002181  Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
 IPR003961  Fibronectin type III
 IPR013032  EGF-like, conserved site
 IPR013783  Immunoglobulin-like fold
 IPR014715  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
 IPR014716  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
 IPR033079  Tenascin-R


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007158 neuron cell-cell adhesion IEA
 biological_processGO:0008306 associative learning IEA
 biological_processGO:0010977 negative regulation of neuron projection development IEA
 biological_processGO:0022029 telencephalon cell migration IEA
 biological_processGO:0022408 negative regulation of cell-cell adhesion IEA
 biological_processGO:0030198 extracellular matrix organization IEA
 biological_processGO:0030517 negative regulation of axon extension IEA
 biological_processGO:0035641 locomotory exploration behavior IEA
 biological_processGO:0048692 negative regulation of axon extension involved in regeneration IEA
 biological_processGO:0050767 regulation of neurogenesis IEA
 biological_processGO:0050804 modulation of chemical synaptic transmission IEA
 biological_processGO:0050805 negative regulation of synaptic transmission IEA
 biological_processGO:0050808 synapse organization IEA
 biological_processGO:0050885 neuromuscular process controlling balance IEA
 biological_processGO:0051968 positive regulation of synaptic transmission, glutamatergic IEA
 biological_processGO:0051971 positive regulation of transmission of nerve impulse IEA
 biological_processGO:0060291 long-term synaptic potentiation IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0045121 membrane raft IEA
 cellular_componentGO:0072534 perineuronal net IEA


Pathways (from Reactome)
Pathway description
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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