ENSDARG00000020771


Danio rerio

Features
Gene ID: ENSDARG00000020771
  
Biological name :tnr
  
Synonyms : tenascin R (restrictin, janusin) / tnr
  
Possible biological names infered from orthology : Q8BYI9 / Q92752 / tenascin R
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 35240485
Gene end: 35474115
  
Corresponding Affymetrix probe sets: DrAffx.1.4.S1_at (Zebrafish Array)   NM_194383_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118943
Ensembl peptide - ENSDARP00000147658
Ensembl peptide - ENSDARP00000010406
NCBI entrez gene - 369191     See in Manteia.
RefSeq - NM_194383
RefSeq Peptide - NP_919364
swissprot - A2CF37
swissprot - F1Q8J7
ZFIN ID - ZDB-GENE-030804-1
Ensembl - ENSDARG00000020771
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNRENSGALG00000004526Gallus gallus
 TNRENSG00000116147Homo sapiens
 TnrENSMUSG00000015829Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnc / tenascin C / P24821* / Q80YX1*ENSDARG0000002194843
zmp:0000000846 / TNC* / P24821* / tenascin C*ENSDARG0000007836242
tnn / tenascin N / Q80Z71* / Q9UQP3*ENSDARG0000002482926
fn1b / fibronectin 1b / FN1* / P02751* / P11276* / fibronectin 1* / Fibronectin Anastellin*ENSDARG0000000652623
fn1a / fibronectin 1a / FN1* / P02751* / P11276* / fibronectin 1* / Fibronectin Anastellin*ENSDARG0000001981522
tnxba / tenascin XBa / TNXB* / P22105* / tenascin XB*ENSDARG0000000176020
fga / fibrinogen alpha chain / E9PV24* / P02671* / Fibrinogen alpha chain Fibrinopeptide A Fibrinogen alpha chain*ENSDARG000000207419
angptl3 / angiopoietin-like 3 / Q9R182* / Q9Y5C1* / Angiopoietin-related protein 3 ANGPTL3(17-224)*ENSDARG000000443658
fgb / fibrinogen beta chain / P02675* / Q8K0E8* / Fibrinogen beta chain Fibrinopeptide B Fibrinogen beta chain*ENSDARG000000089698
fgg / fibrinogen gamma chain / P02679* / Q8VCM7*ENSDARG000000372818
angptl4 / angiopoietin-like 4 / Q9BY76* / Q9Z1P8* / Angiopoietin-related protein 4 *ENSDARG000000358598
fgl1 / fibrinogen-like 1 / Q08830*ENSDARG000001053808
angptl5 / angiopoietin-like 5 / Q86XS5*ENSDARG000000566307
si:ch211-287a12.9ENSDARG000000570047
zgc:194887ENSDARG000000985866


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR002181  Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
 IPR003961  Fibronectin type III
 IPR013032  EGF-like, conserved site
 IPR013783  Immunoglobulin-like fold
 IPR014715  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
 IPR014716  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
 IPR020837  Fibrinogen, conserved site
 IPR033079  Tenascin-R


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007411 axon guidance IDA
 biological_processGO:0050767 regulation of neurogenesis IEA


Pathways (from Reactome)
Pathway description
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000252 optic tract optic tract branchiness , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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