ENSDARG00000024829


Danio rerio

Features
Gene ID: ENSDARG00000024829
  
Biological name :tnn
  
Synonyms : tenascin N / tnn
  
Possible biological names infered from orthology : Q80Z71 / Q9UQP3
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 35509418
Gene end: 35567110
  
Corresponding Affymetrix probe sets: Dr.20167.1.S1_at (Zebrafish Array)   Dr.20167.7.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000033045
Ensembl peptide - ENSDARP00000110076
Ensembl peptide - ENSDARP00000071646
NCBI entrez gene - 30234     See in Manteia.
RefSeq - NM_131036
RefSeq - XM_005171265
RefSeq - XM_009298633
RefSeq Peptide - NP_571111
swissprot - B0S6K6
swissprot - B0S6K5
swissprot - A0A0R4ITL5
swissprot - F1QSR3
ZFIN ID - ZDB-GENE-990415-262
Ensembl - ENSDARG00000024829
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNNENSGALG00000004538Gallus gallus
 TNNENSG00000120332Homo sapiens
 TnnENSMUSG00000026725Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnc / tenascin C / P24821* / Q80YX1*ENSDARG0000002194839
zmp:0000000846 / TNC* / P24821* / tenascin C*ENSDARG0000007836239
tnr / tenascin R (restrictin, janusin) / Q8BYI9* / Q92752* / tenascin R*ENSDARG0000002077138
fn1b / fibronectin 1b / FN1* / P02751* / P11276* / fibronectin 1* / Fibronectin Anastellin*ENSDARG0000000652621
tnxba / tenascin XBa / TNXB* / P22105* / tenascin XB*ENSDARG0000000176021
fn1a / fibronectin 1a / FN1* / P02751* / P11276* / fibronectin 1* / Fibronectin Anastellin*ENSDARG0000001981521
fga / fibrinogen alpha chain / E9PV24* / P02671* / Fibrinogen alpha chain Fibrinopeptide A Fibrinogen alpha chain*ENSDARG0000002074113
fgg / fibrinogen gamma chain / P02679* / Q8VCM7*ENSDARG0000003728111
angptl3 / angiopoietin-like 3 / Q9R182* / Q9Y5C1* / Angiopoietin-related protein 3 ANGPTL3(17-224)*ENSDARG0000004436511
si:ch211-287a12.9ENSDARG0000005700411
fgl1 / fibrinogen-like 1 / Q08830*ENSDARG0000010538010
angptl4 / angiopoietin-like 4 / Q9BY76* / Q9Z1P8* / Angiopoietin-related protein 4 *ENSDARG0000003585910
angptl5 / angiopoietin-like 5 / Q86XS5*ENSDARG0000005663010
fgb / fibrinogen beta chain / P02675* / Q8K0E8* / Fibrinogen beta chain Fibrinopeptide B Fibrinogen beta chain*ENSDARG0000000896910
zgc:194887ENSDARG000000985868


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR002181  Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
 IPR003961  Fibronectin type III
 IPR013032  EGF-like, conserved site
 IPR013783  Immunoglobulin-like fold
 IPR014715  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
 IPR014716  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
 IPR020837  Fibrinogen, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0042127 regulation of cell proliferation IEA
 cellular_componentGO:0031012 extracellular matrix IEA


Pathways (from Reactome)
Pathway description
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000024829 tnn / tenascin N / Q80Z71* / Q9UQP3*  / complex






 

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