ENSDARG00000001760


Danio rerio

Features
Gene ID: ENSDARG00000001760
  
Biological name :tnxba
  
Synonyms : tenascin XBa / tnxba
  
Possible biological names infered from orthology : P22105 / tenascin XB / TNXB
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 16621242
Gene end: 16649764
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000012374
Ensembl peptide - ENSDARP00000150372
swissprot - E7EXE8
ZFIN ID - ZDB-GENE-070103-5
Ensembl - ENSDARG00000001760
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000041031Gallus gallus
 TNXBENSG00000168477Homo sapiens
 TnxbENSMUSG00000033327Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnc / tenascin C / P24821* / Q80YX1*ENSDARG0000002194820
zmp:0000000846 / TNC* / P24821* / tenascin C*ENSDARG0000007836218
tnr / tenascin R (restrictin, janusin) / Q8BYI9* / Q92752* / tenascin R*ENSDARG0000002077117
tnn / tenascin N / Q80Z71* / Q9UQP3*ENSDARG0000002482912
fn1a / fibronectin 1a / FN1* / P02751* / P11276* / fibronectin 1* / Fibronectin Anastellin*ENSDARG0000001981510
fn1b / fibronectin 1b / FN1* / P02751* / P11276* / fibronectin 1* / Fibronectin Anastellin*ENSDARG0000000652610
angptl3 / angiopoietin-like 3 / Q9R182* / Q9Y5C1* / Angiopoietin-related protein 3 ANGPTL3(17-224)*ENSDARG000000443657
fga / fibrinogen alpha chain / E9PV24* / P02671* / Fibrinogen alpha chain Fibrinopeptide A Fibrinogen alpha chain*ENSDARG000000207417
si:ch211-287a12.9ENSDARG000000570046
angptl4 / angiopoietin-like 4 / Q9BY76* / Q9Z1P8* / Angiopoietin-related protein 4 *ENSDARG000000358596
fgb / fibrinogen beta chain / P02675* / Q8K0E8* / Fibrinogen beta chain Fibrinopeptide B Fibrinogen beta chain*ENSDARG000000089696
angptl5 / angiopoietin-like 5 / Q86XS5*ENSDARG000000566306
fgg / fibrinogen gamma chain / P02679* / Q8VCM7*ENSDARG000000372816
fgl1 / fibrinogen-like 1 / Q08830*ENSDARG000001053806
zgc:194887ENSDARG000000985865


Protein motifs (from Interpro)
Interpro ID Name
 IPR002181  Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
 IPR003961  Fibronectin type III
 IPR013032  EGF-like, conserved site
 IPR013111  EGF-like domain, extracellular
 IPR013783  Immunoglobulin-like fold
 IPR014715  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
 IPR014716  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
 IPR020837  Fibrinogen, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030198 extracellular matrix organization IEA
 biological_processGO:0030199 collagen fibril organization IEA


Pathways (from Reactome)
Pathway description
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr