ENSG00000168477


Homo sapiens

Features
Gene ID: ENSG00000168477
  
Biological name :TNXB
  
Synonyms : P22105 / tenascin XB / TNXB
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: p21.32
Gene start: 32041154
Gene end: 32115334
  
Corresponding Affymetrix probe sets: 1565242_at (Human Genome U133 Plus 2.0 Array)   206093_x_at (Human Genome U133 Plus 2.0 Array)   208609_s_at (Human Genome U133 Plus 2.0 Array)   213451_x_at (Human Genome U133 Plus 2.0 Array)   216333_x_at (Human Genome U133 Plus 2.0 Array)   216339_s_at (Human Genome U133 Plus 2.0 Array)   216654_at (Human Genome U133 Plus 2.0 Array)   217413_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000389946
Ensembl peptide - ENSP00000407685
Ensembl peptide - ENSP00000496448
Ensembl peptide - ENSP00000483409
Ensembl peptide - ENSP00000480067
Ensembl peptide - ENSP00000418248
Ensembl peptide - ENSP00000364393
NCBI entrez gene - 7148     See in Manteia.
OMIM - 600985
RefSeq - NM_032470
RefSeq - NM_019105
RefSeq Peptide - NP_061978
RefSeq Peptide - NP_115859
swissprot - C9J7W4
swissprot - P22105
swissprot - A0A1B0GX77
swissprot - A0A087X0I0
swissprot - A0A087WWA5
Ensembl - ENSG00000168477
  
Related genetic diseases (OMIM): 600985 - Ehlers-Danlos syndrome, classic-like, 1 606408
  615963 - Vesicoureteral reflux 8, 615963
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tnxbaENSDARG00000001760Danio rerio
 ENSGALG00000041031Gallus gallus
 TnxbENSMUSG00000033327Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TNC / P24821 / tenascin CENSG0000004198237
TNR / Q92752 / tenascin RENSG0000011614733
TNN / Q9UQP3 / tenascin NENSG0000012033230
FN1 / P02751 / fibronectin 1ENSG0000011541420
FGA / P02671 / fibrinogen alpha chainENSG0000017156016
FGL1 / Q08830 / fibrinogen like 1ENSG0000010476013
FGB / P02675 / fibrinogen beta chainENSG0000017156412
Q9BY76 / ANGPTL4 / angiopoietin like 4ENSG0000016777212
FGG / P02679 / fibrinogen gamma chainENSG0000017155712
Q9Y5C1 / ANGPTL3 / angiopoietin like 3ENSG0000013285511
Q86XS5 / ANGPTL5 / angiopoietin like 5ENSG0000018715111


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR002181  Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
 IPR003961  Fibronectin type III
 IPR013032  EGF-like, conserved site
 IPR013111  EGF-like domain, extracellular
 IPR013783  Immunoglobulin-like fold
 IPR014715  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
 IPR014716  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
 IPR020837  Fibrinogen, conserved site
 IPR033081  Tenascin-X
 IPR036056  Fibrinogen-like, C-terminal
 IPR036116  Fibronectin type III superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion ISS
 biological_processGO:0030036 actin cytoskeleton organization ISS
 biological_processGO:0030198 extracellular matrix organization IEA
 biological_processGO:0030199 collagen fibril organization IEA
 biological_processGO:0032963 collagen metabolic process IMP
 biological_processGO:0048251 elastic fiber assembly IMP
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005583 fibrillar collagen trimer IDA
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0031012 extracellular matrix ISS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005178 integrin binding ISS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008201 heparin binding ISS


Pathways (from Reactome)
Pathway description
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000061 Ambiguous genitalia, female 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000081 Duplicated collecting system 
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 HP:0000140 Menstrual abnormalities 
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 HP:0000144 Decreased fertility 
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 HP:0000174 Abnormality of palate "Any abnormality of the `palate` (FMA:54549), i.e., of roof of the mouth)." [HPO:probinson]
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 HP:0000212 Gingival hyperplasia 
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 HP:0000230 Gingivitis 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000691 Microdontia 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000762 Decreased nerve conduction velocities 
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 HP:0000763 Sensory neuropathy "Peripheral neuropathy affecting primarily the sensory nerves." [HPO:curators]
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 HP:0000813 Bicornuate uterus 
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 HP:0000835 Adrenal hypoplasia 
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 HP:0000963 Thin skin 
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 HP:0000974 Hyperextensible skin 
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 HP:0000977 Soft skin 
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 HP:0000978 Ecchymoses 
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 HP:0000987 Scarring 
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 HP:0001063 Acrocyanosis 
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 HP:0001097 Keratoconjunctivitis sicca "Dryness of the eye related to deficiency of the tear film components (aqueous, mucin, or lipid), lid surface abnormalities, or epithelial abnormalities. Keratoconjunctivitis sicca often results in a scratchy or sandy sensation (foreign body sensation) in the eyes, and may also be associated with itching, inability to produce tears, photosensitivity, redness, pain, and difficulty in moving the eyelids." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001297 Stroke 
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 HP:0001376 Decreased mobility of joints 
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001482 Subcutaneous nodules 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001634 Mitral valve prolapse 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002019 Constipation 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002024 Malabsorption 
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 HP:0002036 Hiatus hernia "A tendency for the upper part of the stomach to herniate into the thorax because of a weakness of the esophageal hiatus, which is the hole in the diaphragm through which the esophagus passes. Hiatus hernia can be asymptomatic or can lead to acid reflux symptoms (heartburn)." [HPO:curators]
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 HP:0002076 Migraine 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002579 Gastrointestinal dysmotility 
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 HP:0002645 Wormian bones 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002758 Osteoarthritis 
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 HP:0002797 Osteolysis 
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 HP:0002827 Dislocated hips 
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 HP:0002829 Arthralgia 
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 HP:0003019 Abnormality of the wrist "Abnormalitly of the wrist, the structure connecting the hand and the forearm." [HPO:curators]
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 HP:0003042 Elbow dislocation "A dislocation affecting the elbow joint, where the radius, ulna, and humerus meet." [HPO:curators]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003298 Spina bifida occulta "The closed form of spina bifida." [HPO:curators]
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
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 HP:0003555 Muscle fiber splitting "Fiber splitting or branching is a common finding in human and rat skeletal muscle pathology. Fiber splitting refers to longitudinal halving of the complete fiber, while branching originates from a regenerating end of a necrotic fiber as invaginations of the sarcolemma. In fiber branching, one end of the fiber remains intact as a single entity, while the other end has several branches." [pmid:6123177]
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0004416 Precocious atherosclerosis 
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 HP:0004970 Ascending aortic dilation 
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 HP:0005293 Frequent early-onset venous insufficiency 
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 HP:0005294 Arterial dissection 
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 HP:0005692 Joint hyperflexibility 
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 HP:0007126 Proximal amyotrophy "Amyotrophy (muscular atrophy) affecting the proximal musculature." [HPO:curators]
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 HP:0009025 Increased connective tissue "The presence of an abnormally increased amount of connective tissue." [HPO:curators]
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 HP:0010318 Aplasia/Hypoplasia of the abdominal wall musculature "Absence or underdevelopment of the abdominal wall musculature." [HPO:curators]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012732 Anorectal anomaly "An abnormality of the anus or rectum." [HPO:probinson]
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 HP:0100550 Rupture of tendons 
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 HP:0100645 Cystocele "When the tough fibrous wall between a woman s bladder and her vagina (the pubocervical fascia) is torn, allowing the bladder to herniate into the vagina." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000168477 TNXB / P22105 / tenascin XB  / complex






 

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